FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6554, 152 aa
  1>>>pF1KE6554 152 - 152 aa - 152 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4864+/-0.000593; mu= 12.2049+/- 0.036
 mean_var=64.9948+/-13.126, 0's: 0 Z-trim(112.7): 7  B-trim: 109 in 1/49
 Lambda= 0.159087
 statistics sampled from 13398 (13405) to 13398 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.412), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS6703.1 NINJ1 gene_id:4814|Hs108|chr9           ( 152)  993 235.4   1e-62
CCDS73418.1 NINJ2 gene_id:4815|Hs108|chr12         ( 135)  431 106.4 6.3e-24
CCDS8505.1 NINJ2 gene_id:4815|Hs108|chr12          ( 188)  431 106.4 8.4e-24
CCDS76499.1 NINJ2 gene_id:4815|Hs108|chr12         ( 106)  333 83.8   3e-17


>>CCDS6703.1 NINJ1 gene_id:4814|Hs108|chr9                (152 aa)
 initn: 993 init1: 993 opt: 993  Z-score: 1239.3  bits: 235.4 E(32554): 1e-62
Smith-Waterman score: 993; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KE6 MDSGTEEYELNGGLPPGTPGSPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MDSGTEEYELNGGLPPGTPGSPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMAN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ASQLKAVVEQGPSFAFYVPLVVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ASQLKAVVEQGPSFAFYVPLVVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNN
               70        80        90       100       110       120

              130       140       150  
pF1KE6 LATGLVFIIVVVNIFITAFGVQKPLMDMAPQQ
       ::::::::::::::::::::::::::::::::
CCDS67 LATGLVFIIVVVNIFITAFGVQKPLMDMAPQQ
              130       140       150  

>>CCDS73418.1 NINJ2 gene_id:4815|Hs108|chr12              (135 aa)
 initn: 455 init1: 421 opt: 431  Z-score: 543.0  bits: 106.4 E(32554): 6.3e-24
Smith-Waterman score: 431; 57.6% identity (80.8% similar) in 125 aa overlap (19-143:5-122)

               10        20        30        40        50        60
pF1KE6 MDSGTEEYELNGGLPPGTPGSPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMAN
                         ::: :  :     :  :::.::::.:::.::::::.::.:.:
CCDS73               MMYMPGSSD--P-----RSQPINLNHYATKKSVAESMLDVALFMSN
                               10             20        30         

               70        80        90       100       110       120
pF1KE6 ASQLKAVVEQGPSFAFYVPLVVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNN
       : .::::.:::::  .:. ::.:::.::.::. .::::. ... .::.  :. .:. :::
CCDS73 AMRLKAVLEQGPSSHYYTTLVTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNN
      40        50        60        70        80        90         

              130       140       150      
pF1KE6 LATGLVFIIVVVNIFITAFGVQKPLMDMAPQQ    
        :: :::. ::.:.::::::..:             
CCDS73 AATILVFFTVVINVFITAFGAHKTGFLAARASRNPL
     100       110       120       130     

>>CCDS8505.1 NINJ2 gene_id:4815|Hs108|chr12               (188 aa)
 initn: 455 init1: 421 opt: 431  Z-score: 540.8  bits: 106.4 E(32554): 8.4e-24
Smith-Waterman score: 432; 53.1% identity (76.9% similar) in 143 aa overlap (1-143:47-175)

                                             10        20        30
pF1KE6                               MDSGTEEYELNGGLPPGTPGSPDASPARWG
                                     :.:. :. .:.       ::: :  :    
CCDS85 AAETQTAEPGGAHAVCSRHPVRVKGLEGSEMESARENIDLQ-------PGSSD--P----
         20        30        40        50               60         

               40        50        60        70        80        90
pF1KE6 WRHGPINVNHYASKKSAAESMLDIALLMANASQLKAVVEQGPSFAFYVPLVVLISISLVL
        :  :::.::::.:::.::::::.::.:.:: .::::.:::::  .:. ::.:::.::.:
CCDS85 -RSQPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLL
             70        80        90       100       110       120  

              100       110       120       130       140       150
pF1KE6 QIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFGVQKPLMDMAP
       :. .::::. ... .::.  :. .:. ::: :: :::. ::.:.::::::..:       
CCDS85 QVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFGAHKTGFLAAR
            130       140       150       160       170       180  

             
pF1KE6 QQ    
             
CCDS85 ASRNPL
             

>>CCDS76499.1 NINJ2 gene_id:4815|Hs108|chr12              (106 aa)
 initn: 351 init1: 333 opt: 333  Z-score: 423.1  bits: 83.8 E(32554): 3e-17
Smith-Waterman score: 333; 57.0% identity (84.9% similar) in 93 aa overlap (51-143:1-93)

               30        40        50        60        70        80
pF1KE6 SPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMANASQLKAVVEQGPSFAFYVPL
                                     :::.::.:.:: .::::.:::::  .:. :
CCDS76                               MLDVALFMSNAMRLKAVLEQGPSSHYYTTL
                                             10        20        30

               90       100       110       120       130       140
pF1KE6 VVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFG
       :.:::.::.::. .::::. ... .::.  :. .:. ::: :: :::. ::.:.::::::
CCDS76 VTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFG
               40        50        60        70        80        90

              150      
pF1KE6 VQKPLMDMAPQQ    
       ..:             
CCDS76 AHKTGFLAARASRNPL
              100      




152 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:22:01 2016 done: Tue Nov  8 14:22:01 2016
 Total Scan time:  1.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]