FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2526, 192 aa 1>>>pF1KE2526 192 - 192 aa - 192 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1650+/-0.000339; mu= 12.9566+/- 0.021 mean_var=54.1253+/-10.988, 0's: 0 Z-trim(114.1): 43 B-trim: 0 in 0/55 Lambda= 0.174331 statistics sampled from 23691 (23732) to 23691 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.278), width: 16 Scan time: 4.710 The best scores are: opt bits E(85289) NP_671513 (OMIM: 601978,605726,614373) sigma non-o ( 192) 1301 335.0 4.6e-92 NP_001269134 (OMIM: 601978,605726,614373) sigma no ( 155) 808 210.9 8e-55 NP_005857 (OMIM: 601978,605726,614373) sigma non-o ( 223) 808 211.0 1.1e-54 NP_001269137 (OMIM: 601978,605726,614373) sigma no ( 159) 800 208.9 3.3e-54 NP_001269138 (OMIM: 601978,605726,614373) sigma no ( 110) 703 184.5 5.2e-47 NP_001269135 (OMIM: 601978,605726,614373) sigma no ( 123) 504 134.5 6.7e-32 NP_001269136 (OMIM: 601978,605726,614373) sigma no ( 203) 504 134.5 1.1e-31 >>NP_671513 (OMIM: 601978,605726,614373) sigma non-opioi (192 aa) initn: 1301 init1: 1301 opt: 1301 Z-score: 1773.8 bits: 335.0 E(85289): 4.6e-92 Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_671 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_671 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_671 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR 130 140 150 160 170 180 190 pF1KE2 LELTTYLFGQDP :::::::::::: NP_671 LELTTYLFGQDP 190 >>NP_001269134 (OMIM: 601978,605726,614373) sigma non-op (155 aa) initn: 808 init1: 808 opt: 808 Z-score: 1105.2 bits: 210.9 E(85289): 8e-55 Smith-Waterman score: 808; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR NP_001 WAEISDTIISGTFHQWREGTTKSEVFYPGPLTSQA 130 140 150 >>NP_005857 (OMIM: 601978,605726,614373) sigma non-opioi (223 aa) initn: 808 init1: 808 opt: 808 Z-score: 1102.7 bits: 211.0 E(85289): 1.1e-54 Smith-Waterman score: 1229; 86.1% identity (86.1% similar) in 223 aa overlap (1-192:1-223) 10 20 30 40 50 60 pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSG-- :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 70 80 90 100 110 120 120 130 140 pF1KE2 -----------------------------ETVVHGPGEATAVEWGPNTWMVEYGRGVIPS ::::::::::::::::::::::::::::::: NP_005 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 130 140 150 160 170 180 150 160 170 180 190 pF1KE2 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP ::::::::::::::::::::::::::::::::::::::::::: NP_005 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 190 200 210 220 >>NP_001269137 (OMIM: 601978,605726,614373) sigma non-op (159 aa) initn: 822 init1: 800 opt: 800 Z-score: 1094.2 bits: 208.9 E(85289): 3.3e-54 Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSVSC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR NP_001 AIVTQGATGLRSRIPSSLAPSTSGERAPPKVRSSTQGRR 130 140 150 >>NP_001269138 (OMIM: 601978,605726,614373) sigma non-op (110 aa) initn: 703 init1: 703 opt: 703 Z-score: 964.9 bits: 184.5 E(85289): 5.2e-47 Smith-Waterman score: 703; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102) 10 20 30 40 50 60 pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET :::::::::::::::::::::::::::::::::::::::::: NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEGDGSTRAW 70 80 90 100 110 130 140 150 160 170 180 pF1KE2 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR >>NP_001269135 (OMIM: 601978,605726,614373) sigma non-op (123 aa) initn: 516 init1: 504 opt: 504 Z-score: 693.6 bits: 134.5 E(85289): 6.7e-32 Smith-Waterman score: 504; 90.6% identity (94.1% similar) in 85 aa overlap (108-192:39-123) 80 90 100 110 120 130 pF1KE2 ELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGETVVHGPGEATAVEWGPNT ::. . . :::::::::::::::::::: NP_001 CAFCTPRCPRRYWAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNT 10 20 30 40 50 60 140 150 160 170 180 190 pF1KE2 WMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 70 80 90 100 110 120 >>NP_001269136 (OMIM: 601978,605726,614373) sigma non-op (203 aa) initn: 711 init1: 504 opt: 504 Z-score: 690.1 bits: 134.5 E(85289): 1.1e-31 Smith-Waterman score: 1053; 77.1% identity (77.1% similar) in 223 aa overlap (1-192:1-203) 10 20 30 40 50 60 pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR ::::::::::::::::::::::::::::::: ::::::::: NP_001 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLG--------------------LDHELAFSR 10 20 30 40 70 80 90 100 110 pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSG-- :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 50 60 70 80 90 100 120 130 140 pF1KE2 -----------------------------ETVVHGPGEATAVEWGPNTWMVEYGRGVIPS ::::::::::::::::::::::::::::::: NP_001 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 110 120 130 140 150 160 150 160 170 180 190 pF1KE2 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP ::::::::::::::::::::::::::::::::::::::::::: NP_001 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 170 180 190 200 192 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:27:19 2016 done: Tue Nov 8 03:27:20 2016 Total Scan time: 4.710 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]