FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2526, 192 aa 1>>>pF1KE2526 192 - 192 aa - 192 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1791+/-0.00077; mu= 12.9998+/- 0.046 mean_var=54.1385+/-11.050, 0's: 0 Z-trim(107.6): 15 B-trim: 564 in 2/49 Lambda= 0.174310 statistics sampled from 9675 (9682) to 9675 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.297), width: 16 Scan time: 1.680 The best scores are: opt bits E(32554) CCDS6563.1 SIGMAR1 gene_id:10280|Hs108|chr9 ( 192) 1301 334.8 2e-92 CCDS6562.1 SIGMAR1 gene_id:10280|Hs108|chr9 ( 223) 808 210.8 4.7e-55 >>CCDS6563.1 SIGMAR1 gene_id:10280|Hs108|chr9 (192 aa) initn: 1301 init1: 1301 opt: 1301 Z-score: 1773.0 bits: 334.8 E(32554): 2e-92 Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGET 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 VVHGPGEATAVEWGPNTWMVEYGRGVIPSTLAFALADTVFSTQDFLTLFYTLRSYARGLR 130 140 150 160 170 180 190 pF1KE2 LELTTYLFGQDP :::::::::::: CCDS65 LELTTYLFGQDP 190 >>CCDS6562.1 SIGMAR1 gene_id:10280|Hs108|chr9 (223 aa) initn: 808 init1: 808 opt: 808 Z-score: 1101.9 bits: 210.8 E(32554): 4.7e-55 Smith-Waterman score: 1229; 86.1% identity (86.1% similar) in 223 aa overlap (1-192:1-223) 10 20 30 40 50 60 pF1KE2 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MQWAVGRRWAWAALLLAVAAVLTQVVWLWLGTQSFVFQREEIAQLARQYAGLDHELAFSR 10 20 30 40 50 60 70 80 90 100 110 pF1KE2 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSG-- :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 LIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRY 70 80 90 100 110 120 120 130 140 pF1KE2 -----------------------------ETVVHGPGEATAVEWGPNTWMVEYGRGVIPS ::::::::::::::::::::::::::::::: CCDS65 WAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPS 130 140 150 160 170 180 150 160 170 180 190 pF1KE2 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP ::::::::::::::::::::::::::::::::::::::::::: CCDS65 TLAFALADTVFSTQDFLTLFYTLRSYARGLRLELTTYLFGQDP 190 200 210 220 192 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 03:27:18 2016 done: Tue Nov 8 03:27:19 2016 Total Scan time: 1.680 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]