Result of FASTA (omim) for
pFN21AE1875
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1875, 398 aa
1>>>pF1KE1875 398 - 398 aa - 398 aa
Library: /omim/omim.rfq.tfa
62246620 residues in 87639 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6747+/-0.000329; mu= 2.9366+/- 0.021
mean_var=186.7181+/-37.854, 0's: 0 Z-trim(121.3): 36 B-trim: 2151 in 1/54
Lambda= 0.093860
statistics sampled from 38131 (38167) to 38131 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.436), width: 16
Scan time: 10.160
The best scores are: opt bits E(87639)
NP_001488 (OMIM: 137060,607091) beta-1,4-galactosy ( 398) 2723 380.6 3.7e-105
XP_005251497 (OMIM: 137060,607091) PREDICTED: beta ( 357) 1902 269.4 1e-71
XP_016858206 (OMIM: 604013) PREDICTED: beta-1,4-ga ( 372) 1339 193.2 9.2e-49
NP_001005417 (OMIM: 604013) beta-1,4-galactosyltra ( 372) 1339 193.2 9.2e-49
XP_016858205 (OMIM: 604013) PREDICTED: beta-1,4-ga ( 372) 1339 193.2 9.2e-49
NP_003771 (OMIM: 604013) beta-1,4-galactosyltransf ( 372) 1339 193.2 9.2e-49
NP_085076 (OMIM: 604013) beta-1,4-galactosyltransf ( 401) 1339 193.2 9.7e-49
NP_003770 (OMIM: 604014) beta-1,4-galactosyltransf ( 393) 1122 163.8 6.7e-40
XP_005245623 (OMIM: 604014) PREDICTED: beta-1,4-ga ( 393) 1122 163.8 6.7e-40
NP_001186803 (OMIM: 604014) beta-1,4-galactosyltra ( 393) 1122 163.8 6.7e-40
NP_001186802 (OMIM: 604014) beta-1,4-galactosyltra ( 393) 1122 163.8 6.7e-40
XP_011508395 (OMIM: 604014) PREDICTED: beta-1,4-ga ( 310) 983 144.9 2.6e-34
XP_016858203 (OMIM: 604014) PREDICTED: beta-1,4-ga ( 310) 983 144.9 2.6e-34
NP_997708 (OMIM: 604015) beta-1,4-galactosyltransf ( 344) 937 138.7 2.1e-32
NP_003769 (OMIM: 604015) beta-1,4-galactosyltransf ( 344) 937 138.7 2.1e-32
XP_006713863 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 937 138.7 2.1e-32
XP_006713862 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 937 138.7 2.1e-32
XP_011511562 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 937 138.7 2.1e-32
XP_005247912 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 937 138.7 2.1e-32
XP_006713864 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 937 138.7 2.1e-32
XP_006713861 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 937 138.7 2.1e-32
NP_004767 (OMIM: 604016) beta-1,4-galactosyltransf ( 388) 833 124.7 4e-28
NP_001317499 (OMIM: 604017) beta-1,4-galactosyltra ( 343) 788 118.5 2.5e-26
XP_006722642 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 338) 780 117.5 5.2e-26
XP_016881578 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 338) 780 117.5 5.2e-26
XP_005258444 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 370) 780 117.5 5.6e-26
NP_004766 (OMIM: 604017) beta-1,4-galactosyltransf ( 382) 780 117.5 5.7e-26
XP_006722641 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 344) 746 112.9 1.3e-24
XP_016881580 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 269) 696 106.0 1.1e-22
XP_016881579 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 274) 696 106.0 1.2e-22
XP_016858204 (OMIM: 604014) PREDICTED: beta-1,4-ga ( 227) 623 96.1 9.4e-20
XP_016881581 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 202) 602 93.2 6.1e-19
XP_016862890 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 303) 541 85.1 2.6e-16
NP_009186 (OMIM: 130070,604327) beta-1,4-galactosy ( 327) 430 70.0 9.3e-12
XP_016864488 (OMIM: 130070,604327) PREDICTED: beta ( 213) 356 59.9 6.8e-09
XP_006714879 (OMIM: 130070,604327) PREDICTED: beta ( 167) 252 45.8 9.7e-05
>>NP_001488 (OMIM: 137060,607091) beta-1,4-galactosyltra (398 aa)
initn: 2723 init1: 2723 opt: 2723 Z-score: 2009.1 bits: 380.6 E(87639): 3.7e-105
Smith-Waterman score: 2723; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)
10 20 30 40 50 60
pF1KE1 MRLREPLLSGSAAMPGASLQRACRLLVAVCALHLGVTLVYYLAGRDLSRLPQLVGVSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRLREPLLSGSAAMPGASLQRACRLLVAVCALHLGVTLVYYLAGRDLSRLPQLVGVSTPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 QGGSNSAAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGGSNSAAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HTTALSLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTTALSLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 IIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 YTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE1 NGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIA
310 320 330 340 350 360
370 380 390
pF1KE1 HTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
::::::::::::::::::::::::::::::::::::::
NP_001 HTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
370 380 390
>>XP_005251497 (OMIM: 137060,607091) PREDICTED: beta-1,4 (357 aa)
initn: 1902 init1: 1902 opt: 1902 Z-score: 1408.9 bits: 269.4 E(87639): 1e-71
Smith-Waterman score: 2332; 89.7% identity (89.7% similar) in 398 aa overlap (1-398:1-357)
10 20 30 40 50 60
pF1KE1 MRLREPLLSGSAAMPGASLQRACRLLVAVCALHLGVTLVYYLAGRDLSRLPQLVGVSTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MRLREPLLSGSAAMPGASLQRACRLLVAVCALHLGVTLVYYLAGRDLSRLPQLVGVSTPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 QGGSNSAAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QGGSNSAAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 HTTALSLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HTTALSLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 IIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE1 YTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTI
::::::::::::::::::::::::::::::::::::::
XP_005 YTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGF----------------------
250 260 270
310 320 330 340 350 360
pF1KE1 NGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIA
:::::::::::::::::::::::::::::::::::::::::
XP_005 -------------------RLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIA
280 290 300 310
370 380 390
pF1KE1 HTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
::::::::::::::::::::::::::::::::::::::
XP_005 HTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
320 330 340 350
>>XP_016858206 (OMIM: 604013) PREDICTED: beta-1,4-galact (372 aa)
initn: 1323 init1: 809 opt: 1339 Z-score: 996.7 bits: 193.2 E(87639): 9.2e-49
Smith-Waterman score: 1366; 54.0% identity (74.2% similar) in 383 aa overlap (16-397:6-365)
10 20 30 40 50 60
pF1KE1 MRLREPLLSGSAAMPGASLQRACRLLVAVCALHLGVTLVYYLAGRDLSRLPQLVGVSTPL
:..:.:.:. .. .: ::. :... :. :. .:. :
XP_016 MSRLLGGTLERVCKAVLLLCLLHFLVAVILYF---DV-YAQHLAFFSRFS
10 20 30 40
70 80 90 100 110 120
pF1KE1 QGGSNSAAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVP
: : . ::. .. .:: ..:. :. : .. :::
XP_016 ARGPAHALHPAASSSSSSSNCSRPNATASSSGLPE-------VPSALPGP----------
50 60 70 80
130 140 150 160 170 180
pF1KE1 HTTALSLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAI
:: .:: ::. : ::: .::::. :. :: : ..::.: :::::.: ::. . ::.
XP_016 --TAPTLPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAV
90 100 110 120 130 140
190 200 210 220 230
pF1KE1 IIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALK-DY
:::::.:..::.:::.::::.:.::.: ::.::::: :. ::::::::::: :::: :
XP_016 IIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDA
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE1 DYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLT
: ::.::::::.::.:.: ::: .::::...::::::: :::. ::::::.::: :::
XP_016 AYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLR
210 220 230 240 250 260
300 310 320 330 340 350
pF1KE1 INGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRI
::::::.::::::::::::::. . ::.::::. .:: :::.:.:::.:::::::: .:
XP_016 INGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKI
270 280 290 300 310 320
360 370 380 390
pF1KE1 AHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
.:: :: ::..:. ::::.:.: ::.:.:::::: :
XP_016 QNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGRPPSWPPRG
330 340 350 360 370
>>NP_001005417 (OMIM: 604013) beta-1,4-galactosyltransfe (372 aa)
initn: 1323 init1: 809 opt: 1339 Z-score: 996.7 bits: 193.2 E(87639): 9.2e-49
Smith-Waterman score: 1366; 54.0% identity (74.2% similar) in 383 aa overlap (16-397:6-365)
10 20 30 40 50 60
pF1KE1 MRLREPLLSGSAAMPGASLQRACRLLVAVCALHLGVTLVYYLAGRDLSRLPQLVGVSTPL
:..:.:.:. .. .: ::. :... :. :. .:. :
NP_001 MSRLLGGTLERVCKAVLLLCLLHFLVAVILYF---DV-YAQHLAFFSRFS
10 20 30 40
70 80 90 100 110 120
pF1KE1 QGGSNSAAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVP
: : . ::. .. .:: ..:. :. : .. :::
NP_001 ARGPAHALHPAASSSSSSSNCSRPNATASSSGLPE-------VPSALPGP----------
50 60 70 80
130 140 150 160 170 180
pF1KE1 HTTALSLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAI
:: .:: ::. : ::: .::::. :. :: : ..::.: :::::.: ::. . ::.
NP_001 --TAPTLPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAV
90 100 110 120 130 140
190 200 210 220 230
pF1KE1 IIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALK-DY
:::::.:..::.:::.::::.:.::.: ::.::::: :. ::::::::::: :::: :
NP_001 IIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDA
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE1 DYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLT
: ::.::::::.::.:.: ::: .::::...::::::: :::. ::::::.::: :::
NP_001 AYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLR
210 220 230 240 250 260
300 310 320 330 340 350
pF1KE1 INGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRI
::::::.::::::::::::::. . ::.::::. .:: :::.:.:::.:::::::: .:
NP_001 INGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKI
270 280 290 300 310 320
360 370 380 390
pF1KE1 AHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
.:: :: ::..:. ::::.:.: ::.:.:::::: :
NP_001 QNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGRPPSWPPRG
330 340 350 360 370
>>XP_016858205 (OMIM: 604013) PREDICTED: beta-1,4-galact (372 aa)
initn: 1323 init1: 809 opt: 1339 Z-score: 996.7 bits: 193.2 E(87639): 9.2e-49
Smith-Waterman score: 1366; 54.0% identity (74.2% similar) in 383 aa overlap (16-397:6-365)
10 20 30 40 50 60
pF1KE1 MRLREPLLSGSAAMPGASLQRACRLLVAVCALHLGVTLVYYLAGRDLSRLPQLVGVSTPL
:..:.:.:. .. .: ::. :... :. :. .:. :
XP_016 MSRLLGGTLERVCKAVLLLCLLHFLVAVILYF---DV-YAQHLAFFSRFS
10 20 30 40
70 80 90 100 110 120
pF1KE1 QGGSNSAAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVP
: : . ::. .. .:: ..:. :. : .. :::
XP_016 ARGPAHALHPAASSSSSSSNCSRPNATASSSGLPE-------VPSALPGP----------
50 60 70 80
130 140 150 160 170 180
pF1KE1 HTTALSLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAI
:: .:: ::. : ::: .::::. :. :: : ..::.: :::::.: ::. . ::.
XP_016 --TAPTLPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAV
90 100 110 120 130 140
190 200 210 220 230
pF1KE1 IIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALK-DY
:::::.:..::.:::.::::.:.::.: ::.::::: :. ::::::::::: :::: :
XP_016 IIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDA
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE1 DYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLT
: ::.::::::.::.:.: ::: .::::...::::::: :::. ::::::.::: :::
XP_016 AYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLR
210 220 230 240 250 260
300 310 320 330 340 350
pF1KE1 INGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRI
::::::.::::::::::::::. . ::.::::. .:: :::.:.:::.:::::::: .:
XP_016 INGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKI
270 280 290 300 310 320
360 370 380 390
pF1KE1 AHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
.:: :: ::..:. ::::.:.: ::.:.:::::: :
XP_016 QNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGRPPSWPPRG
330 340 350 360 370
>>NP_003771 (OMIM: 604013) beta-1,4-galactosyltransferas (372 aa)
initn: 1323 init1: 809 opt: 1339 Z-score: 996.7 bits: 193.2 E(87639): 9.2e-49
Smith-Waterman score: 1366; 54.0% identity (74.2% similar) in 383 aa overlap (16-397:6-365)
10 20 30 40 50 60
pF1KE1 MRLREPLLSGSAAMPGASLQRACRLLVAVCALHLGVTLVYYLAGRDLSRLPQLVGVSTPL
:..:.:.:. .. .: ::. :... :. :. .:. :
NP_003 MSRLLGGTLERVCKAVLLLCLLHFLVAVILYF---DV-YAQHLAFFSRFS
10 20 30 40
70 80 90 100 110 120
pF1KE1 QGGSNSAAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVP
: : . ::. .. .:: ..:. :. : .. :::
NP_003 ARGPAHALHPAASSSSSSSNCSRPNATASSSGLPE-------VPSALPGP----------
50 60 70 80
130 140 150 160 170 180
pF1KE1 HTTALSLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAI
:: .:: ::. : ::: .::::. :. :: : ..::.: :::::.: ::. . ::.
NP_003 --TAPTLPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYTPPDCTPAQTVAV
90 100 110 120 130 140
190 200 210 220 230
pF1KE1 IIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALK-DY
:::::.:..::.:::.::::.:.::.: ::.::::: :. ::::::::::: :::: :
NP_003 IIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDA
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE1 DYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLT
: ::.::::::.::.:.: ::: .::::...::::::: :::. ::::::.::: :::
NP_003 AYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRLPYAGYFGGVSGLSKAQFLR
210 220 230 240 250 260
300 310 320 330 340 350
pF1KE1 INGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRI
::::::.::::::::::::::. . ::.::::. .:: :::.:.:::.:::::::: .:
NP_003 INGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKI
270 280 290 300 310 320
360 370 380 390
pF1KE1 AHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
.:: :: ::..:. ::::.:.: ::.:.:::::: :
NP_003 QNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGRPPSWPPRG
330 340 350 360 370
>>NP_085076 (OMIM: 604013) beta-1,4-galactosyltransferas (401 aa)
initn: 1323 init1: 809 opt: 1339 Z-score: 996.2 bits: 193.2 E(87639): 9.7e-49
Smith-Waterman score: 1370; 53.5% identity (73.8% similar) in 389 aa overlap (10-397:29-394)
10 20 30 40
pF1KE1 MRLREPLLSGSAAMPGASLQRACRLLVAVCALHLGVTLVYY
: . . :..:.:.:. .. .: ::. :... :
NP_085 MAVEVQEQWPCLPAAGCPGPLGGPVAACGMSRLLGGTLERVCKAVLLLCLLHFLVAVILY
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE1 LAGRDLSRLPQLVGVSTPLQGGSNSAAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSS
. :. .:. : : : . ::. .. .:: ..:. :.
NP_085 F---DV-YAQHLAFFSRFSARGPAHALHPAASSSSSSSNCSRPNATASSSGLPE------
70 80 90 100 110
110 120 130 140 150 160
pF1KE1 PVVDSGPGPASNLTSVPVPHTTALSLPACPEESPLLVGPMLIEFNMPVDLELVAKQNPNV
: .. ::: :: .:: ::. : ::: .::::. :. :: : ..::.:
NP_085 -VPSALPGP------------TAPTLPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGV
120 130 140 150
170 180 190 200 210 220
pF1KE1 KMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTI
:::::.: ::. . ::.:::::.:..::.:::.::::.:.::.: ::.::::: :.
NP_085 LMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDT
160 170 180 190 200 210
230 240 250 260 270 280
pF1KE1 FNRAKLLNVGFQEALK-DYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFSL
::::::::::: :::: : : ::.::::::.::.:.: ::: .::::...::::::: :
NP_085 FNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRL
220 230 240 250 260 270
290 300 310 320 330 340
pF1KE1 PYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRM
::. ::::::.::: ::: ::::::.::::::::::::::. . ::.::::. .:: ::
NP_085 PYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRM
280 290 300 310 320 330
350 360 370 380 390
pF1KE1 IRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
:.:.:::.:::::::: .: .:: :: ::..:. ::::.:.: ::.:.:::::: :
NP_085 IKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGRPPSW
340 350 360 370 380 390
NP_085 PPRG
400
>>NP_003770 (OMIM: 604014) beta-1,4-galactosyltransferas (393 aa)
initn: 1124 init1: 576 opt: 1122 Z-score: 837.5 bits: 163.8 E(87639): 6.7e-40
Smith-Waterman score: 1122; 55.4% identity (77.2% similar) in 307 aa overlap (97-396:39-344)
70 80 90 100 110 120
pF1KE1 AAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVD-SGPGPA-SNLTSVP-VPH--
: :..:. : : : . :::. .: .:
NP_003 PCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDQGPTFDYSHPRDVYSNLSHLPGAPGGP
10 20 30 40 50 60
130 140 150 160 170 180
pF1KE1 TTALSLPACPEESPLLVGPMLIEFNMPV-DLELVAKQNPNVKMGGRYAPRDCVSPHKVAI
. .:: :::.:::::::. . :. :: .: ....:: :. :::: : : ..::
NP_003 PAPQGLPYCPERSPLLVGPVSVSFS-PVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTAI
70 80 90 100 110 120
190 200 210 220 230 240
pF1KE1 IIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYD
:.: : :..::. ::.::: :::::: ::::::.:::. :::::::::: .:::.: .
NP_003 IVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEE
130 140 150 160 170 180
250 260 270 280 290
pF1KE1 YTCFVFSDVDLIPMNDHNAYRCFSQ-PRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLT
. :. . ::::.: :::: : : . :::..:::.:::.:::: :::::::::. .:.:
NP_003 WDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLK
190 200 210 220 230 240
300 310 320 330 340 350
pF1KE1 INGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRI
.:::::.::::::::::: .:. . ::.:::: . ::. .:..: :: :: ::.::: .
NP_003 MNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLL
250 260 270 280 290 300
360 370 380 390
pF1KE1 AHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
..:... .::.::::::.: . ::::.::.::::
NP_003 VRTQNSWTQDGMNSLTYQLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQ
310 320 330 340 350 360
NP_003 EMLQRRPPARPGPLSTANHTALRGSH
370 380 390
>>XP_005245623 (OMIM: 604014) PREDICTED: beta-1,4-galact (393 aa)
initn: 1124 init1: 576 opt: 1122 Z-score: 837.5 bits: 163.8 E(87639): 6.7e-40
Smith-Waterman score: 1122; 55.4% identity (77.2% similar) in 307 aa overlap (97-396:39-344)
70 80 90 100 110 120
pF1KE1 AAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVD-SGPGPA-SNLTSVP-VPH--
: :..:. : : : . :::. .: .:
XP_005 PCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDQGPTFDYSHPRDVYSNLSHLPGAPGGP
10 20 30 40 50 60
130 140 150 160 170 180
pF1KE1 TTALSLPACPEESPLLVGPMLIEFNMPV-DLELVAKQNPNVKMGGRYAPRDCVSPHKVAI
. .:: :::.:::::::. . :. :: .: ....:: :. :::: : : ..::
XP_005 PAPQGLPYCPERSPLLVGPVSVSFS-PVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTAI
70 80 90 100 110 120
190 200 210 220 230 240
pF1KE1 IIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYD
:.: : :..::. ::.::: :::::: ::::::.:::. :::::::::: .:::.: .
XP_005 IVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEE
130 140 150 160 170 180
250 260 270 280 290
pF1KE1 YTCFVFSDVDLIPMNDHNAYRCFSQ-PRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLT
. :. . ::::.: :::: : : . :::..:::.:::.:::: :::::::::. .:.:
XP_005 WDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLK
190 200 210 220 230 240
300 310 320 330 340 350
pF1KE1 INGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRI
.:::::.::::::::::: .:. . ::.:::: . ::. .:..: :: :: ::.::: .
XP_005 MNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLL
250 260 270 280 290 300
360 370 380 390
pF1KE1 AHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
..:... .::.::::::.: . ::::.::.::::
XP_005 VRTQNSWTQDGMNSLTYQLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQ
310 320 330 340 350 360
XP_005 EMLQRRPPARPGPLSTANHTALRGSH
370 380 390
>>NP_001186803 (OMIM: 604014) beta-1,4-galactosyltransfe (393 aa)
initn: 1124 init1: 576 opt: 1122 Z-score: 837.5 bits: 163.8 E(87639): 6.7e-40
Smith-Waterman score: 1122; 55.4% identity (77.2% similar) in 307 aa overlap (97-396:39-344)
70 80 90 100 110 120
pF1KE1 AAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVD-SGPGPA-SNLTSVP-VPH--
: :..:. : : : . :::. .: .:
NP_001 PCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDQGPTFDYSHPRDVYSNLSHLPGAPGGP
10 20 30 40 50 60
130 140 150 160 170 180
pF1KE1 TTALSLPACPEESPLLVGPMLIEFNMPV-DLELVAKQNPNVKMGGRYAPRDCVSPHKVAI
. .:: :::.:::::::. . :. :: .: ....:: :. :::: : : ..::
NP_001 PAPQGLPYCPERSPLLVGPVSVSFS-PVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTAI
70 80 90 100 110 120
190 200 210 220 230 240
pF1KE1 IIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYD
:.: : :..::. ::.::: :::::: ::::::.:::. :::::::::: .:::.: .
NP_001 IVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEE
130 140 150 160 170 180
250 260 270 280 290
pF1KE1 YTCFVFSDVDLIPMNDHNAYRCFSQ-PRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLT
. :. . ::::.: :::: : : . :::..:::.:::.:::: :::::::::. .:.:
NP_001 WDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLK
190 200 210 220 230 240
300 310 320 330 340 350
pF1KE1 INGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRI
.:::::.::::::::::: .:. . ::.:::: . ::. .:..: :: :: ::.::: .
NP_001 MNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLL
250 260 270 280 290 300
360 370 380 390
pF1KE1 AHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS
..:... .::.::::::.: . ::::.::.::::
NP_001 VRTQNSWTQDGMNSLTYQLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQ
310 320 330 340 350 360
NP_001 EMLQRRPPARPGPLSTANHTALRGSH
370 380 390
398 residues in 1 query sequences
62246620 residues in 87639 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Jul 27 10:34:06 2017 done: Thu Jul 27 10:34:08 2017
Total Scan time: 10.160 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]