FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6664, 283 aa 1>>>pF1KE6664 283 - 283 aa - 283 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4246+/-0.000399; mu= 13.5003+/- 0.025 mean_var=57.5280+/-11.541, 0's: 0 Z-trim(110.9): 17 B-trim: 112 in 1/53 Lambda= 0.169096 statistics sampled from 19305 (19317) to 19305 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.226), width: 16 Scan time: 6.760 The best scores are: opt bits E(85289) NP_002442 (OMIM: 156540) S-methyl-5'-thioadenosine ( 283) 1888 469.1 4.2e-132 NP_000261 (OMIM: 164050,613179) purine nucleoside ( 289) 273 75.1 1.7e-13 >>NP_002442 (OMIM: 156540) S-methyl-5'-thioadenosine pho (283 aa) initn: 1888 init1: 1888 opt: 1888 Z-score: 2492.6 bits: 469.1 E(85289): 4.2e-132 Smith-Waterman score: 1888; 99.6% identity (100.0% similar) in 283 aa overlap (1-283:1-283) 10 20 30 40 50 60 pF1KE6 MASGTTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCILLAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: NP_002 MASGTTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLAR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 HGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 HGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 PQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTL 190 200 210 220 230 240 250 260 270 280 pF1KE6 KENANKAKSLLLTTIPQIGSTEWSETLHNLKNMAQFSVLLPRH ::::::::::::::::::::::::::::::::::::::::::: NP_002 KENANKAKSLLLTTIPQIGSTEWSETLHNLKNMAQFSVLLPRH 250 260 270 280 >>NP_000261 (OMIM: 164050,613179) purine nucleoside phos (289 aa) initn: 181 init1: 137 opt: 273 Z-score: 363.2 bits: 75.1 E(85289): 1.7e-13 Smith-Waterman score: 273; 27.1% identity (58.8% similar) in 262 aa overlap (11-256:26-283) 10 20 30 40 pF1KE6 MASGTTTTAVKIGIIGGTGLDD--PEILEGRTEKYVDTP-FGK-- ...:: :.:: .. ... : . : : . NP_000 MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST 10 20 30 40 50 60 50 60 70 80 90 pF1KE6 -PSDA--LILGKIKNVDCILLARHGRQHTI--MPS-KVNYQANIWALKEEGCTHVIVTTA :. : :..: ... :... .:: : .: ::.. . .. : : ..::.: NP_000 VPGHAGRLVFGFLNGRACVMM--QGRFHMYEGYPLWKVTFPVRVFHLL--GVDTLVVTNA 70 80 90 100 110 100 110 120 130 140 150 pF1KE6 CGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIE :.: ... :::..: . :. . :. : .. : :.. . :. . NP_000 AGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALS 120 130 140 150 160 170 160 170 180 190 200 210 pF1KE6 TAKKLG-LRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYA : :..: : ..::.: . :: : . :: ... :::...:.:::::..:.. :. NP_000 TWKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVF 180 190 200 210 220 230 220 230 240 250 260 pF1KE6 SIAMATDYDCWK-EHEEAVSVDRVLKTLKENANKAK---SLLLTTIPQIGSTEWSETLHN .... :. : : .. ..:: . :. :.: . :.:...:: NP_000 GFSLITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLPDKAS 240 250 260 270 280 270 280 pF1KE6 LKNMAQFSVLLPRH 283 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:14:01 2016 done: Tue Nov 8 15:14:02 2016 Total Scan time: 6.760 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]