FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1675, 189 aa 1>>>pF1KE1675 189 - 189 aa - 189 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8275+/-0.000922; mu= 9.7934+/- 0.055 mean_var=60.3275+/-11.811, 0's: 0 Z-trim(104.3): 22 B-trim: 0 in 0/51 Lambda= 0.165126 statistics sampled from 7818 (7837) to 7818 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.241), width: 16 Scan time: 1.930 The best scores are: opt bits E(32554) CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 1213 297.4 3.5e-81 CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1002 247.1 4.8e-66 CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 996 245.7 1.3e-65 CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 994 245.2 1.8e-65 CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 993 245.0 2.1e-65 CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 991 244.5 2.9e-65 CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 977 241.1 3e-64 CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 975 240.7 4.1e-64 CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 973 240.2 5.7e-64 CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 964 238.1 2.5e-63 CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 951 235.0 2.2e-62 CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 922 228.0 2.6e-60 CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 917 226.9 6e-60 CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 717 179.2 1.4e-45 CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 349 91.5 3.5e-19 CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 291 77.7 4.6e-15 >>CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 (189 aa) initn: 1213 init1: 1213 opt: 1213 Z-score: 1570.9 bits: 297.4 E(32554): 3.5e-81 Smith-Waterman score: 1213; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE ::::::::: CCDS65 LQKRLKSKE >>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa) initn: 1002 init1: 1002 opt: 1002 Z-score: 1299.2 bits: 247.1 E(32554): 4.8e-66 Smith-Waterman score: 1002; 82.0% identity (91.5% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE ::: : ::.:::::. ::. ::::::::::::.:::.:...::: :::::::::::::: CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE ::::::: .:::::::::::::::::::::::::::::. ::::::.:: :: ::::::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .:.:::::: ..::: ::::.:::::::::::::::::: ::::::::::::::::: : CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE ::.::. :: CCDS65 LQERLRRKE >>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa) initn: 996 init1: 996 opt: 996 Z-score: 1291.5 bits: 245.7 E(32554): 1.3e-65 Smith-Waterman score: 996; 81.5% identity (92.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::.: ::.:..::::::. :::::::::::::::::::::::: :::::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE ::::::: .:::::::::::::::::::::::::::::. ...::..: ::.::::::: CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.::::: :.::: ::::::.:::::::::::::::: ::::::::::::::::: CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE1 LQKRLKSKE .:.::. :: CCDS64 FQERLRRKE >>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa) initn: 1011 init1: 994 opt: 994 Z-score: 1288.9 bits: 245.2 E(32554): 1.8e-65 Smith-Waterman score: 994; 81.0% identity (92.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE ::: : :..:::::: :: ::::.: :::::.:::.:.:.::::::::::::::::::: CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE ::::::: .::::::::::::::.::::::::::.:::: :::::..::::: ::.:::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.::::: :.::: :::::::.:::::::::: ::::: :::::::::::::.:.: : CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE :::::. :. CCDS65 LQKRLRRKD >>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa) initn: 1014 init1: 993 opt: 993 Z-score: 1287.6 bits: 245.0 E(32554): 2.1e-65 Smith-Waterman score: 993; 81.5% identity (92.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::.: ::.:..::::::. :::::::::::::::::::::::: ::: :::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE ::.:::: .::::::::::::::::::::::::.::::: ...::..: :: ::::::: CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.::::: :.::: :::::::::::::::::::::::: :::::::::::::.:.: : CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE :::::. :. CCDS64 LQKRLRRKD >>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa) initn: 1012 init1: 991 opt: 991 Z-score: 1285.1 bits: 244.5 E(32554): 2.9e-65 Smith-Waterman score: 991; 80.4% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::.: ::.:..::::::. :::::::::::::::::::::.:: ::::::::::::::. CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE .:::::: .::::::::::::::::::::::::.::::: ...::..: :: ::::::: CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.::::: :.::: :::::::::::::::::: :.::: :::::::::::::.:.: : CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE :::::. :. CCDS64 LQKRLRRKD >>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa) initn: 1014 init1: 977 opt: 977 Z-score: 1267.0 bits: 241.1 E(32554): 3e-64 Smith-Waterman score: 977; 79.9% identity (92.1% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::.: ::.:..::::::. :::::::::::::::::::::::: :::::::::::::: CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE .:::::: .::::.:::::::::::::::::::.::::: ...::..: :: ::::.:: CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.::::. :.::: :::::::::::::::::::::::: :::::::::::::.:.: : CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE ::: :. :. CCDS65 LQKILRRKD >>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa) initn: 975 init1: 632 opt: 975 Z-score: 1264.5 bits: 240.7 E(32554): 4.1e-64 Smith-Waterman score: 975; 82.0% identity (89.4% similar) in 189 aa overlap (1-189:1-188) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE ::::: :::::.::: :: :.:::::::::::.::.:.::::::::: :::::::::: CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE :::::: . :::::..: :::::::: :::::::::::: ::::::.:: :: ::::::: CCDS65 FPQEEFGN-QFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .::.: ::: :.::: :::::::::::::::::: ::::: ::::::::::::::::: : CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 120 130 140 150 160 170 pF1KE1 LQKRLKSKE ::. :.::: CCDS65 LQESLRSKE 180 >>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa) initn: 990 init1: 973 opt: 973 Z-score: 1261.9 bits: 240.2 E(32554): 5.7e-64 Smith-Waterman score: 973; 82.0% identity (89.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE :::.: ::.:..::::::. :::::::::::::::::::::::: ::: :::::::.:: CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE :::: :: .:::::::::..::::::::::::::::::: ::::::.::::: ::::::: CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .:: ::::: : :: :::::::::::::::::: :::: :::::::::::::::.: : CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE ::: :. :. CCDS34 LQKGLRRKD >>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa) initn: 964 init1: 964 opt: 964 Z-score: 1250.3 bits: 238.1 E(32554): 2.5e-63 Smith-Waterman score: 964; 81.0% identity (89.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE ::: : ::.:::::: :: :: ::::::::::.::...::::::::: ::::::::::. CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE ::::::: .:::::.:::::::.::::::::::::::.: :: :::..: :: ::::::: CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN .:::::: : .::: :::::::::::::::::::::::: ::::::::::::::: : : CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE1 LQKRLKSKE ::.::. :: CCDS65 LQERLRRKE 189 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:35:10 2016 done: Sun Nov 6 05:35:10 2016 Total Scan time: 1.930 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]