FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1671, 189 aa 1>>>pF1KE1671 189 - 189 aa - 189 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8798+/-0.000389; mu= 15.4770+/- 0.024 mean_var=64.4950+/-12.530, 0's: 0 Z-trim(112.1): 18 B-trim: 0 in 0/53 Lambda= 0.159702 statistics sampled from 20938 (20955) to 20938 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.246), width: 16 Scan time: 4.770 The best scores are: opt bits E(85289) NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1255 297.7 7.5e-81 NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1100 262.0 4.2e-70 NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1091 259.9 1.8e-69 NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 1074 256.0 2.7e-68 NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 1069 254.8 6e-68 NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 1068 254.6 7e-68 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 1064 253.7 1.3e-67 NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 1058 252.3 3.4e-67 NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 1058 252.3 3.4e-67 NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 1041 248.4 5.2e-66 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 1039 247.9 7.2e-66 NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 1022 244.0 1.1e-64 NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 1002 239.4 2.6e-63 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 715 173.3 2.2e-43 NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 357 90.8 1.5e-18 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 346 88.2 8.3e-18 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 159 45.2 8.3e-05 >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 1255 init1: 1255 opt: 1255 Z-score: 1572.5 bits: 297.7 E(85289): 7.5e-81 Smith-Waterman score: 1255; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: NP_002 LQERLRRKE >>NP_002166 (OMIM: 147584) interferon alpha-21 precursor (189 aa) initn: 1100 init1: 1100 opt: 1100 Z-score: 1379.5 bits: 262.0 E(85289): 4.2e-70 Smith-Waterman score: 1100; 86.8% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:...::::::::::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE ::::::::::::::::::::::::::::::::::::::::...::.:: ::: ::::::: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..::::::.::::::::::.:.:::::::::::::::::::::::::::::::::: NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE1 LQERLRRKE .:::::::: NP_002 FQERLRRKE >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 1091 init1: 1091 opt: 1091 Z-score: 1368.3 bits: 259.9 E(85289): 1.8e-69 Smith-Waterman score: 1091; 84.7% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG :::::.:.::::::.::: :::::.: :::::.::::::.:::: :::::::::::::: NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE :::::::::::::::::::::::.::::::::::.:::.::::::.::: ::.::.:::: NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..::::::.::::: ::::.:.:::::::::: :::::::::::::::::::.:.:.: NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. NP_002 LQKRLRRKD >>NP_066282 (OMIM: 147566) interferon alpha-6 precursor (189 aa) initn: 1074 init1: 1074 opt: 1074 Z-score: 1347.2 bits: 256.0 E(85289): 2.7e-68 Smith-Waterman score: 1074; 86.2% identity (93.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG :::::.::::::::.::: ::: :::::::::..:::.:..::: ::: :::::::::: NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE ::::::::::::::.:::::::.::::::::::::::..::: ::::.:::::::::::: NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::.:::: : ::::: ::::.:::::::::::::::::::::::::::::::::: : : NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: NP_066 LQERLRRKE >>NP_008831 (OMIM: 147578) interferon alpha-1/13 precurs (190 aa) initn: 1069 init1: 1069 opt: 1069 Z-score: 1340.9 bits: 254.8 E(85289): 6e-68 Smith-Waterman score: 1069; 84.7% identity (94.2% similar) in 189 aa overlap (1-189:2-190) 10 20 30 40 50 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDF :: ::.::::::::.::: ::::::::.::::.::::::..:::.:::: ::: ::::: NP_008 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDL ::::::::::::::: :::::::.::: ::::.::::::.::: ::::: :::::::::: NP_008 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 EACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSA :::.::: : .:::::.::::.:.:::.::::::::::::::::::::::::::.:::. NP_008 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 180 pF1KE1 NLQERLRRKE :::::::::: NP_008 NLQERLRRKE 190 >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 1083 init1: 1068 opt: 1068 Z-score: 1339.7 bits: 254.6 E(85289): 7e-68 Smith-Waterman score: 1068; 83.6% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:...::::::: ::::::::::: NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE ::.:::::.::::::::::::::::::::::::.::::.:...::.:: ::::::::::: NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..::::::.::::: ::::.::::::::::::::::::::::::::::::::.:.:.: NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. NP_066 LQKRLRRKD >>NP_076918 (OMIM: 147660) interferon alpha-1/13 precurs (189 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1334.7 bits: 253.7 E(85289): 1.3e-67 Smith-Waterman score: 1064; 84.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG :: ::.:::.::::.::: ::::::::.::::.::::::..:::.:::: ::: :::::: NP_076 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE :::::::::::::: :::::::.::: ::::.::::::.::: ::::: ::::::::::: NP_076 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::.::: : .:::::.::::.:.:::.::::::::::::::::::::::::::.:::.: NP_076 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: NP_076 LQERLRRKE >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 1073 init1: 1058 opt: 1058 Z-score: 1327.2 bits: 252.3 E(85289): 3.4e-67 Smith-Waterman score: 1058; 82.5% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:...::::::::::::::::::: NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE .::::::::::::.:::::::::::::::::::.::::.:...::.:: ::::::::.:: NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..::::.:.::::: ::::.::::::::::::::::::::::::::::::::.:.:.: NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::. ::::. NP_067 LQKILRRKD >>NP_002162 (OMIM: 147577) interferon alpha-10 precursor (189 aa) initn: 1073 init1: 1058 opt: 1058 Z-score: 1327.2 bits: 252.3 E(85289): 3.4e-67 Smith-Waterman score: 1058; 82.5% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:....::::::::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE .::::::::::::::::::::::::::::::::.::::.:...::.:: ::::::::::: NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..::::::.::::: ::::.:::::::::::: :.:::::::::::::::::.:.:.: NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. NP_002 LQKRLRRKD >>NP_000596 (OMIM: 147562) interferon alpha-2 precursor (188 aa) initn: 1039 init1: 683 opt: 1041 Z-score: 1306.1 bits: 248.4 E(85289): 5.2e-66 Smith-Waterman score: 1041; 83.6% identity (93.1% similar) in 189 aa overlap (1-189:1-188) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG ::: :.::.::.::.::: ::.::::::::::..:::::..::: ::: ::::::::::: NP_000 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE :::::: :::::::..: :::::::: :::::::::::.::::::::::::::::::::: NP_000 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..: ::: .::::. ::::.:::::::::::: :::::::::::::::::::::::.: NP_000 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 120 130 140 150 160 170 pF1KE1 LQERLRRKE ::: :: :: NP_000 LQESLRSKE 180 189 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:34:20 2016 done: Tue Nov 8 07:34:21 2016 Total Scan time: 4.770 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]