FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1671, 189 aa 1>>>pF1KE1671 189 - 189 aa - 189 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9286+/-0.000867; mu= 14.8944+/- 0.052 mean_var=61.7908+/-12.270, 0's: 0 Z-trim(105.8): 27 B-trim: 0 in 0/51 Lambda= 0.163159 statistics sampled from 8601 (8621) to 8601 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.265), width: 16 Scan time: 1.850 The best scores are: opt bits E(32554) CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1255 303.7 4.4e-83 CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1100 267.2 4.2e-72 CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1091 265.1 1.8e-71 CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1074 261.1 2.9e-70 CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 1069 259.9 6.7e-70 CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1068 259.7 7.8e-70 CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 1064 258.7 1.5e-69 CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1058 257.3 4e-69 CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1058 257.3 4e-69 CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 1041 253.3 6.4e-68 CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1039 252.9 8.9e-68 CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1022 248.9 1.4e-66 CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 1002 244.1 3.7e-65 CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 715 176.6 8.3e-45 CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 357 92.3 2e-19 CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 346 89.7 1.1e-18 >>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa) initn: 1255 init1: 1255 opt: 1255 Z-score: 1605.1 bits: 303.7 E(32554): 4.4e-83 Smith-Waterman score: 1255; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: CCDS65 LQERLRRKE >>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa) initn: 1100 init1: 1100 opt: 1100 Z-score: 1407.9 bits: 267.2 E(32554): 4.2e-72 Smith-Waterman score: 1100; 86.8% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:...::::::::::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE ::::::::::::::::::::::::::::::::::::::::...::.:: ::: ::::::: CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..::::::.::::::::::.:.:::::::::::::::::::::::::::::::::: CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE1 LQERLRRKE .:::::::: CCDS64 FQERLRRKE >>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa) initn: 1091 init1: 1091 opt: 1091 Z-score: 1396.5 bits: 265.1 E(32554): 1.8e-71 Smith-Waterman score: 1091; 84.7% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG :::::.:.::::::.::: :::::.: :::::.::::::.:::: :::::::::::::: CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE :::::::::::::::::::::::.::::::::::.:::.::::::.::: ::.::.:::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..::::::.::::: ::::.:.:::::::::: :::::::::::::::::::.:.:.: CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. CCDS65 LQKRLRRKD >>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa) initn: 1074 init1: 1074 opt: 1074 Z-score: 1374.8 bits: 261.1 E(32554): 2.9e-70 Smith-Waterman score: 1074; 86.2% identity (93.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG :::::.::::::::.::: ::: :::::::::..:::.:..::: ::: :::::::::: CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE ::::::::::::::.:::::::.::::::::::::::..::: ::::.:::::::::::: CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::.:::: : ::::: ::::.:::::::::::::::::::::::::::::::::: : : CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: CCDS65 LQERLRRKE >>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa) initn: 1069 init1: 1069 opt: 1069 Z-score: 1368.4 bits: 259.9 E(32554): 6.7e-70 Smith-Waterman score: 1069; 84.7% identity (94.2% similar) in 189 aa overlap (1-189:2-190) 10 20 30 40 50 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDF :: ::.::::::::.::: ::::::::.::::.::::::..:::.:::: ::: ::::: CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDL ::::::::::::::: :::::::.::: ::::.::::::.::: ::::: :::::::::: CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 EACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSA :::.::: : .:::::.::::.:.:::.::::::::::::::::::::::::::.:::. CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 180 pF1KE1 NLQERLRRKE :::::::::: CCDS65 NLQERLRRKE 190 >>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa) initn: 1083 init1: 1068 opt: 1068 Z-score: 1367.2 bits: 259.7 E(32554): 7.8e-70 Smith-Waterman score: 1068; 83.6% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:...::::::: ::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE ::.:::::.::::::::::::::::::::::::.::::.:...::.:: ::::::::::: CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..::::::.::::: ::::.::::::::::::::::::::::::::::::::.:.:.: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. CCDS64 LQKRLRRKD >>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1362.1 bits: 258.7 E(32554): 1.5e-69 Smith-Waterman score: 1064; 84.1% identity (94.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG :: ::.:::.::::.::: ::::::::.::::.::::::..:::.:::: ::: :::::: CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE :::::::::::::: :::::::.::: ::::.::::::.::: ::::: ::::::::::: CCDS65 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::.::: : .:::::.::::.:.:::.::::::::::::::::::::::::::.:::.: CCDS65 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::::::::: CCDS65 LQERLRRKE >>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa) initn: 1073 init1: 1058 opt: 1058 Z-score: 1354.5 bits: 257.3 E(32554): 4e-69 Smith-Waterman score: 1058; 82.5% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:...::::::::::::::::::: CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE .::::::::::::.:::::::::::::::::::.::::.:...::.:: ::::::::.:: CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..::::.:.::::: ::::.::::::::::::::::::::::::::::::::.:.:.: CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::. ::::. CCDS65 LQKILRRKD >>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa) initn: 1073 init1: 1058 opt: 1058 Z-score: 1354.5 bits: 257.3 E(32554): 4e-69 Smith-Waterman score: 1058; 82.5% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:....::::::::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE .::::::::::::::::::::::::::::::::.::::.:...::.:: ::::::::::: CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..::::::.::::: ::::.:::::::::::: :.:::::::::::::::::.:.:.: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE1 LQERLRRKE ::.:::::. CCDS64 LQKRLRRKD >>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa) initn: 1039 init1: 683 opt: 1041 Z-score: 1332.9 bits: 253.3 E(32554): 6.4e-68 Smith-Waterman score: 1041; 83.6% identity (93.1% similar) in 189 aa overlap (1-189:1-188) 10 20 30 40 50 60 pF1KE1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG ::: :.::.::.::.::: ::.::::::::::..:::::..::: ::: ::::::::::: CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE :::::: :::::::..: :::::::: :::::::::::.::::::::::::::::::::: CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN ::..: ::: .::::. ::::.:::::::::::: :::::::::::::::::::::::.: CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 120 130 140 150 160 170 pF1KE1 LQERLRRKE ::: :: :: CCDS65 LQESLRSKE 180 189 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:34:19 2016 done: Tue Nov 8 07:34:20 2016 Total Scan time: 1.850 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]