FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3050, 189 aa 1>>>pF1KE3050 189 - 189 aa - 189 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1896+/-0.000386; mu= 13.6074+/- 0.024 mean_var=63.1553+/-12.843, 0's: 0 Z-trim(112.3): 17 B-trim: 1163 in 1/49 Lambda= 0.161387 statistics sampled from 21135 (21152) to 21135 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.248), width: 16 Scan time: 4.980 The best scores are: opt bits E(85289) NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 1229 294.6 6.2e-80 NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 1177 282.5 2.8e-76 NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 1176 282.3 3.2e-76 NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 1130 271.6 5.4e-73 NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1125 270.4 1.2e-72 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 1082 260.4 1.3e-69 NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1058 254.8 6e-68 NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1049 252.7 2.6e-67 NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 993 239.7 2.2e-63 NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 990 239.0 3.5e-63 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 985 237.8 7.9e-63 NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 984 237.6 9.3e-63 NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 977 235.9 2.9e-62 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 708 173.3 2.1e-43 NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 360 92.3 5.5e-19 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 331 85.5 5.4e-17 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 173 48.8 7e-06 >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 1229 init1: 1229 opt: 1229 Z-score: 1556.0 bits: 294.6 E(85289): 6.2e-80 Smith-Waterman score: 1229; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::::::::: NP_067 LQKILRRKD >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 1177 init1: 1177 opt: 1177 Z-score: 1490.6 bits: 282.5 E(85289): 2.8e-76 Smith-Waterman score: 1177; 95.8% identity (98.9% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .:.:::::.::::.:::::::::::::::::::::::::::::::::::::::::::.:: NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::: ::::: NP_066 LQKRLRRKD >>NP_002162 (OMIM: 147577) interferon alpha-10 precursor (189 aa) initn: 1176 init1: 1176 opt: 1176 Z-score: 1489.3 bits: 282.3 E(85289): 3.2e-76 Smith-Waterman score: 1176; 95.2% identity (98.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::::::::::::.:::::::::::::::::::::::::::::::::::::::::::.:: NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::::::::::::: :.::::::::::::::::::::::: NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::: ::::: NP_002 LQKRLRRKD >>NP_066401 (OMIM: 147567) interferon alpha-7 precursor (189 aa) initn: 1130 init1: 1130 opt: 1130 Z-score: 1431.4 bits: 271.6 E(85289): 5.4e-73 Smith-Waterman score: 1130; 92.1% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :: ::::::.:::::::::::::::::::::: ::::::::::::::::::::::::.: NP_066 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .:.:::::.::::::::::::::::::::::::::::::::::::::::::::::::.:: NP_066 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::: ::::::::::::::: :::::::::::::::::::.::::: NP_066 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD :.: ::::: NP_066 LKKGLRRKD >>NP_002166 (OMIM: 147584) interferon alpha-21 precursor (189 aa) initn: 1170 init1: 1125 opt: 1125 Z-score: 1425.1 bits: 270.4 E(85289): 1.2e-72 Smith-Waterman score: 1125; 91.0% identity (97.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::::::::::::.:::::::::::::::::::.::::.::::::::::::: ::::.:: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::: ::::::.::::::::::::::::::::::::::::::.:.: NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE3 LQKILRRKD .:. ::::. NP_002 FQERLRRKE >>NP_002164 (OMIM: 147580) interferon alpha-16 precursor (189 aa) initn: 1082 init1: 1082 opt: 1082 Z-score: 1371.0 bits: 260.4 E(85289): 1.3e-69 Smith-Waterman score: 1082; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::: :::::::.::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::: ::::::::.::::..:::::::::::::.::::::...::.:: ::.::::.:: NP_002 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::: ::::.:: ::::::::::::::::::::: ::::::::::::::::::.::::: NP_002 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::: ::::: NP_002 LQKGLRRKD >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 1073 init1: 1058 opt: 1058 Z-score: 1340.8 bits: 254.8 E(85289): 6e-68 Smith-Waterman score: 1058; 82.5% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:...::::::::::::::::::: NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::::::::::::.:::::::::::::::::::.::::.:...::.:: ::::::::.:: NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::..::::.:.::::: ::::.::::::::::::::::::::::::::::::::.:.:.: NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::. ::::. NP_002 LQERLRRKE >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 1329.5 bits: 252.7 E(85289): 2.6e-67 Smith-Waterman score: 1049; 83.1% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: :::::::::::::: NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::::::::::::.:::::::::.:::::::::..:::::...::::: ::.::.:.:: NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::.:::::::::: ::::::::::::::::::::::::: NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::: ::::: NP_002 LQKRLRRKD >>NP_000596 (OMIM: 147562) interferon alpha-2 precursor (188 aa) initn: 1006 init1: 647 opt: 993 Z-score: 1259.1 bits: 239.7 E(85289): 2.2e-63 Smith-Waterman score: 993; 80.4% identity (93.1% similar) in 189 aa overlap (1-189:1-188) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: ::::::::::: NP_000 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::::: ::::::...: :::::::: ::::::.::::::...::.:: ::::::::.:: NP_000 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::: ::. :::::.:::::::::::::::::: :::::::::::::::::::.:.::: NP_000 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 120 130 140 150 160 170 pF1KE3 LQKILRRKD ::. :: :. NP_000 LQESLRSKE 180 >>NP_008831 (OMIM: 147578) interferon alpha-1/13 precurs (190 aa) initn: 1010 init1: 990 opt: 990 Z-score: 1255.2 bits: 239.0 E(85289): 3.5e-63 Smith-Waterman score: 990; 79.4% identity (92.1% similar) in 189 aa overlap (1-189:2-190) 10 20 30 40 50 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDF :: :.::::..::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::: NP_008 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 GLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNL :.::::::::::::. :::::::.::: ::::.:.::::::...::.:: ::::::::.: NP_008 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 EACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFST ::::.:: . :::::: ::::::.:::.::::::::::::::::::::::::::::.:: NP_008 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 180 pF1KE3 NLQKILRRKD :::. ::::. NP_008 NLQERLRRKE 190 189 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:27:06 2016 done: Sun Nov 6 04:27:07 2016 Total Scan time: 4.980 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]