FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3050, 189 aa 1>>>pF1KE3050 189 - 189 aa - 189 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7707+/-0.0009; mu= 10.3051+/- 0.054 mean_var=64.7476+/-13.056, 0's: 0 Z-trim(105.5): 20 B-trim: 0 in 0/48 Lambda= 0.159391 statistics sampled from 8436 (8455) to 8436 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.26), width: 16 Scan time: 1.840 The best scores are: opt bits E(32554) CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1229 291.2 2.6e-79 CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1177 279.2 1e-75 CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1176 279.0 1.2e-75 CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1130 268.4 1.8e-72 CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1125 267.3 4.1e-72 CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1082 257.4 3.8e-69 CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1058 251.9 1.8e-67 CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1049 249.8 7.4e-67 CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 993 236.9 5.5e-63 CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 990 236.2 9e-63 CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 985 235.1 2e-62 CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 984 234.8 2.3e-62 CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 977 233.2 7.1e-62 CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 708 171.4 3.1e-43 CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 360 91.4 4e-19 CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 331 84.7 3.7e-17 >>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa) initn: 1229 init1: 1229 opt: 1229 Z-score: 1537.5 bits: 291.2 E(32554): 2.6e-79 Smith-Waterman score: 1229; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::::::::: CCDS65 LQKILRRKD >>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa) initn: 1177 init1: 1177 opt: 1177 Z-score: 1472.8 bits: 279.2 E(32554): 1e-75 Smith-Waterman score: 1177; 95.8% identity (98.9% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .:.:::::.::::.:::::::::::::::::::::::::::::::::::::::::::.:: CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::: ::::: CCDS64 LQKRLRRKD >>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa) initn: 1176 init1: 1176 opt: 1176 Z-score: 1471.6 bits: 279.0 E(32554): 1.2e-75 Smith-Waterman score: 1176; 95.2% identity (98.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::::::::::::.:::::::::::::::::::::::::::::::::::::::::::.:: CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::::::::::::: :.::::::::::::::::::::::: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::: ::::: CCDS64 LQKRLRRKD >>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa) initn: 1130 init1: 1130 opt: 1130 Z-score: 1414.4 bits: 268.4 E(32554): 1.8e-72 Smith-Waterman score: 1130; 92.1% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :: ::::::.:::::::::::::::::::::: ::::::::::::::::::::::::.: CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .:.:::::.::::::::::::::::::::::::::::::::::::::::::::::::.:: CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::: ::::::::::::::: :::::::::::::::::::.::::: CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD :.: ::::: CCDS34 LKKGLRRKD >>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa) initn: 1170 init1: 1125 opt: 1125 Z-score: 1408.2 bits: 267.3 E(32554): 4.1e-72 Smith-Waterman score: 1125; 91.0% identity (97.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::::::::::::.:::::::::::::::::::.::::.::::::::::::: ::::.:: CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::: ::::::.::::::::::::::::::::::::::::::.:.: CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE3 LQKILRRKD .:. ::::. CCDS64 FQERLRRKE >>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa) initn: 1082 init1: 1082 opt: 1082 Z-score: 1354.8 bits: 257.4 E(32554): 3.8e-69 Smith-Waterman score: 1082; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::: :::::::.::: CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::: ::::::::.::::..:::::::::::::.::::::...::.:: ::.::::.:: CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::: ::::.:: ::::::::::::::::::::: ::::::::::::::::::.::::: CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::: ::::: CCDS34 LQKGLRRKD >>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa) initn: 1073 init1: 1058 opt: 1058 Z-score: 1325.0 bits: 251.9 E(32554): 1.8e-67 Smith-Waterman score: 1058; 82.5% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:...::::::::::::::::::: CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::::::::::::.:::::::::::::::::::.::::.:...::.:: ::::::::.:: CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::..::::.:.::::: ::::.::::::::::::::::::::::::::::::::.:.:.: CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::. ::::. CCDS65 LQERLRRKE >>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 1313.8 bits: 249.8 E(32554): 7.4e-67 Smith-Waterman score: 1049; 83.1% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: :::::::::::::: CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::::::::::::.:::::::::.:::::::::..:::::...::::: ::.::.:.:: CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::.:::::::::: ::::::::::::::::::::::::: CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE3 LQKILRRKD ::: ::::: CCDS65 LQKRLRRKD >>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa) initn: 1006 init1: 647 opt: 993 Z-score: 1244.2 bits: 236.9 E(32554): 5.5e-63 Smith-Waterman score: 993; 80.4% identity (93.1% similar) in 189 aa overlap (1-189:1-188) 10 20 30 40 50 60 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: ::::::::::: CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE .::::: ::::::...: :::::::: ::::::.::::::...::.:: ::::::::.:: CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::: ::. :::::.:::::::::::::::::: :::::::::::::::::::.:.::: CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 120 130 140 150 160 170 pF1KE3 LQKILRRKD ::. :: :. CCDS65 LQESLRSKE 180 >>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa) initn: 1010 init1: 990 opt: 990 Z-score: 1240.4 bits: 236.2 E(32554): 9e-63 Smith-Waterman score: 990; 79.4% identity (92.1% similar) in 189 aa overlap (1-189:2-190) 10 20 30 40 50 pF1KE3 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDF :: :.::::..::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::: CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 GLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNL :.::::::::::::. :::::::.::: ::::.:.::::::...::.:: ::::::::.: CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 EACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFST ::::.:: . :::::: ::::::.:::.::::::::::::::::::::::::::::.:: CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 180 pF1KE3 NLQKILRRKD :::. ::::. CCDS65 NLQERLRRKE 190 189 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:27:06 2016 done: Sun Nov 6 04:27:06 2016 Total Scan time: 1.840 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]