FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2100, 189 aa 1>>>pF1KE2100 189 - 189 aa - 189 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7355+/-0.000866; mu= 10.1746+/- 0.051 mean_var=63.2496+/-12.849, 0's: 0 Z-trim(105.8): 23 B-trim: 0 in 0/49 Lambda= 0.161267 statistics sampled from 8602 (8621) to 8602 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.265), width: 16 Scan time: 1.690 The best scores are: opt bits E(32554) CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1230 294.7 2.3e-80 CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1182 283.5 5.2e-77 CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1172 281.2 2.6e-76 CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1149 275.8 1.1e-74 CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1130 271.4 2.3e-73 CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1101 264.7 2.5e-71 CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1063 255.8 1.1e-68 CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1054 253.7 4.8e-68 CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 1002 241.6 2.1e-64 CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1002 241.6 2.1e-64 CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 995 240.0 6.6e-64 CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 990 238.8 1.5e-63 CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 988 238.4 2e-63 CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 704 172.3 1.6e-43 CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 355 91.1 4.8e-19 CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 335 86.5 1.1e-17 >>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa) initn: 1230 init1: 1230 opt: 1230 Z-score: 1556.4 bits: 294.7 E(32554): 2.3e-80 Smith-Waterman score: 1230; 99.5% identity (100.0% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::::::::: CCDS64 LQKRLRRKD >>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa) initn: 1182 init1: 1182 opt: 1182 Z-score: 1496.0 bits: 283.5 E(32554): 5.2e-77 Smith-Waterman score: 1182; 96.3% identity (98.9% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::::::::::::::::::::::::::::::::::::::::::::::.:: CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::: ::::: CCDS65 LQKILRRKD >>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa) initn: 1172 init1: 1172 opt: 1172 Z-score: 1483.4 bits: 281.2 E(32554): 2.6e-76 Smith-Waterman score: 1172; 95.2% identity (98.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::.:::::: :::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE .:.:::::.::::.:::::::::::::::::::::::::::::::::::::::::::::: CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::::::::::::: :.::::::::::::::::::::::: CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::::::::: CCDS64 LQKRLRRKD >>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa) initn: 1149 init1: 1149 opt: 1149 Z-score: 1454.5 bits: 275.8 E(32554): 1.1e-74 Smith-Waterman score: 1149; 94.2% identity (96.3% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :: ::::::.:::::::::::::::::::::: ::::::::::::::: ::::::::.: CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::: ::::::::::::::: :::::::::::::::::::.::::: CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD :.: ::::: CCDS34 LKKGLRRKD >>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa) initn: 1165 init1: 1130 opt: 1130 Z-score: 1430.6 bits: 271.4 E(32554): 2.3e-73 Smith-Waterman score: 1130; 91.5% identity (97.4% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::::::::::::.::::.::::::::::::: ::::::: CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::: ::::::.::::::::::::::::::::::::::::::.:.: CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 130 140 150 160 170 180 pF1KE2 LQKRLRRKD .:.:::::. CCDS64 FQERLRRKE >>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa) initn: 1101 init1: 1101 opt: 1101 Z-score: 1394.2 bits: 264.7 E(32554): 2.5e-71 Smith-Waterman score: 1101; 88.4% identity (95.2% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.: :::.::::.::::..:::::::::::::.::::::...::.:: ::.::::::: CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::: ::::::: ::::::::::::::::::::: ::::::::::::::::::.::::: CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::: ::::: CCDS34 LQKGLRRKD >>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa) initn: 1078 init1: 1063 opt: 1063 Z-score: 1346.4 bits: 255.8 E(32554): 1.1e-68 Smith-Waterman score: 1063; 83.1% identity (96.8% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG ::: : ::::..::. ::::::::::::::::.:::.:...::::::: ::::::::::: CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::::::::::::.::::.:...::.:: ::::::::::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::..::::::.::::: ::::.::::::::::::::::::::::::::::::::.:.:.: CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::.:::::. CCDS65 LQERLRRKE >>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa) initn: 1054 init1: 1054 opt: 1054 Z-score: 1335.1 bits: 253.7 E(32554): 4.8e-68 Smith-Waterman score: 1054; 83.6% identity (94.7% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: :::::::::: CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::.:::::::::.:::::::::..:::::...::::: ::.::.:::: CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::::::::::::::::::::::.:::::::::: ::::::::::::::::::::::::: CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::::::::: CCDS65 LQKRLRRKD >>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa) initn: 1006 init1: 644 opt: 1002 Z-score: 1269.7 bits: 241.6 E(32554): 2.1e-64 Smith-Waterman score: 1002; 81.0% identity (93.1% similar) in 189 aa overlap (1-189:1-188) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: ::::::::::: CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.::: :.::::...: :::::::: ::::::.::::::...::.:: ::::::::::: CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 70 80 90 100 110 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN ::::: ::: :::::.:::::::::::::::::: :::::::::::::::::::.:.::: CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 120 130 140 150 160 170 pF1KE2 LQKRLRRKD ::. :: :. CCDS65 LQESLRSKE 180 >>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa) initn: 1017 init1: 1002 opt: 1002 Z-score: 1269.7 bits: 241.6 E(32554): 2.1e-64 Smith-Waterman score: 1002; 81.0% identity (92.6% similar) in 189 aa overlap (1-189:1-189) 10 20 30 40 50 60 pF1KE2 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::::: CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE ::.:::::.::::..:::::::.::::::::::.:::.::.. ::.:. ::::::::::: CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN :::.::: : :::::::::::::::::::::::::::::::::::::::::::.: : : CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 130 140 150 160 170 180 pF1KE2 LQKRLRRKD ::.:::::. CCDS65 LQERLRRKE 189 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:49:47 2016 done: Sun Nov 6 15:49:47 2016 Total Scan time: 1.690 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]