FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5332, 290 aa 1>>>pF1KE5332 290 - 290 aa - 290 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7114+/-0.00117; mu= 13.2810+/- 0.070 mean_var=95.7358+/-19.414, 0's: 0 Z-trim(104.1): 103 B-trim: 343 in 1/49 Lambda= 0.131080 statistics sampled from 7640 (7749) to 7640 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.238), width: 16 Scan time: 2.320 The best scores are: opt bits E(32554) CCDS6464.1 CD274 gene_id:29126|Hs108|chr9 ( 290) 1903 370.5 8e-103 CCDS59118.1 CD274 gene_id:29126|Hs108|chr9 ( 176) 1049 208.8 2.3e-54 CCDS10251.1 CD276 gene_id:80381|Hs108|chr15 ( 316) 416 89.3 3.8e-18 CCDS32288.1 CD276 gene_id:80381|Hs108|chr15 ( 534) 412 88.8 9.6e-18 CCDS6465.1 PDCD1LG2 gene_id:80380|Hs108|chr9 ( 273) 366 79.8 2.4e-15 >>CCDS6464.1 CD274 gene_id:29126|Hs108|chr9 (290 aa) initn: 1903 init1: 1903 opt: 1903 Z-score: 1959.4 bits: 370.5 E(32554): 8e-103 Smith-Waterman score: 1903; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290) 10 20 30 40 50 60 pF1KE5 MRIFAVFIFMTYWHLLNAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 MRIFAVFIFMTYWHLLNAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEME 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 DKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 DKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 ADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNERTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 TTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNERTH 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 LVILGAILLCLGVALTFIFRLRKGRMMDVKKCGIQDTNSKKQSDTHLEET :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 LVILGAILLCLGVALTFIFRLRKGRMMDVKKCGIQDTNSKKQSDTHLEET 250 260 270 280 290 >>CCDS59118.1 CD274 gene_id:29126|Hs108|chr9 (176 aa) initn: 1049 init1: 1049 opt: 1049 Z-score: 1089.5 bits: 208.8 E(32554): 2.3e-54 Smith-Waterman score: 1049; 99.4% identity (100.0% similar) in 161 aa overlap (130-290:16-176) 100 110 120 130 140 150 pF1KE5 QITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEG .::::::::::::::::::::::::::::: CCDS59 MRIFAVFIFMTYWHLLNAPYNKINQRILVVDPVTSEHELTCQAEG 10 20 30 40 160 170 180 190 200 210 pF1KE5 YPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 YPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEEN 50 60 70 80 90 100 220 230 240 250 260 270 pF1KE5 HTAELVIPELPLAHPPNERTHLVILGAILLCLGVALTFIFRLRKGRMMDVKKCGIQDTNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 HTAELVIPELPLAHPPNERTHLVILGAILLCLGVALTFIFRLRKGRMMDVKKCGIQDTNS 110 120 130 140 150 160 280 290 pF1KE5 KKQSDTHLEET ::::::::::: CCDS59 KKQSDTHLEET 170 >>CCDS10251.1 CD276 gene_id:80381|Hs108|chr15 (316 aa) initn: 311 init1: 180 opt: 416 Z-score: 439.2 bits: 89.3 E(32554): 3.8e-18 Smith-Waterman score: 416; 30.2% identity (59.3% similar) in 285 aa overlap (13-288:22-300) 10 20 30 40 50 pF1KE5 MRIFAVFIFMTYWH-LLNAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDL : : .:. : ::.: :. :.. :. :.: : ..: CCDS10 MLRRRGSPGMGVHVGAALGALWFCLTGALEVQVPEDPVVALVGTDATLCCSFSPEPGFSL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 AALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAG : : . :.. : . :.::. . . : :.: .:. :. : :. :::.:.. :.. : : CCDS10 AQLNLIWQLTDTK--QLVHSFAEGQDQGSAYANRTALFPDLLAQGNASLRLQRVRVADEG 70 80 90 100 110 120 130 140 150 160 pF1KE5 VYRCMISYGGADYKRITVKVNAPYNKI------NQRILVVDPVTSEHELTCQA-EGYPKA . :..: ....: :::.: :. . : :: .::.. .:::.: CCDS10 SFTCFVSIRDFGSAAVSLQVAAPYSKPSMTLEPNKDLRPGDTVT----ITCSSYRGYPEA 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE5 EVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAE ::.: ... :.:..::.. :. ::.: :.::. .: . : : ... . CCDS10 EVFWQDGQGVPLTGNVTTSQMANEQGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGS 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE5 LVIPELPLAHPPNERTHLVILGAILLCLGVALTFIFRLRKGRMMDVKKCGIQDTNSKKQ- ..: :.. ::. : :.. :. : :::.:. . . . .. : .: ... . CCDS10 VTITGQPMTFPPEALWVTVGLSVCLIALLVALAFVCWRKIKQSCEEENAGAEDQDGEGEG 240 250 260 270 280 290 290 pF1KE5 SDTHLEET : : :. CCDS10 SKTALQPLKHSDSKEDDGQEIA 300 310 >>CCDS32288.1 CD276 gene_id:80381|Hs108|chr15 (534 aa) initn: 443 init1: 180 opt: 412 Z-score: 432.0 bits: 88.8 E(32554): 9.6e-18 Smith-Waterman score: 412; 30.1% identity (59.5% similar) in 279 aa overlap (18-288:246-518) 10 20 30 40 pF1KE5 MRIFAVFIFMTYWHLLNAFTVTVPKDLYVVEYGSNMTIECKFPVEKQ : : ::.: :. :.. :..:.: : CCDS32 GTYSCLVRNPVLQQDAHSSVTITPQRSPTGAVEVQVPEDPVVALVGTDATLRCSFSPEPG 220 230 240 250 260 270 50 60 70 80 90 100 pF1KE5 LDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQ ..:: : . :.. : . :.::. . . : :.: .:. :. : :. :::.:.. :.. CCDS32 FSLAQLNLIWQLTDTK--QLVHSFTEGRDQGSAYANRTALFPDLLAQGNASLRLQRVRVA 280 290 300 310 320 330 110 120 130 140 150 160 pF1KE5 DAGVYRCMISYGGADYKRITVKVNAPYNKI------NQRILVVDPVTSEHELTCQA-EGY : : . :..: ....: :::.: :. . : :: .::.. .:: CCDS32 DEGSFTCFVSIRDFGSAAVSLQVAAPYSKPSMTLEPNKDLRPGDTVT----ITCSSYRGY 340 350 360 370 380 170 180 190 200 210 220 pF1KE5 PKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENH :.:::.: ... :.:..::.. :. ::.: :.::. .: . : : ... CCDS32 PEAEVFWQDGQGVPLTGNVTTSQMANEQGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDA 390 400 410 420 430 440 230 240 250 260 270 280 pF1KE5 TAELVIPELPLAHPPNERTHLVILGAILLCLGVALTFIFRLRKGRMMDVKKCGIQDTNSK . ..: :.. ::. : :.. :. : :::.:. . . . .. : .: ... CCDS32 HGSVTITGQPMTFPPEALWVTVGLSVCLIALLVALAFVCWRKIKQSCEEENAGAEDQDGE 450 460 470 480 490 500 290 pF1KE5 KQ-SDTHLEET . : : :. CCDS32 GEGSKTALQPLKHSDSKEDDGQEIA 510 520 530 >-- initn: 247 init1: 145 opt: 374 Z-score: 393.2 bits: 81.6 E(32554): 1.4e-15 Smith-Waterman score: 374; 31.6% identity (60.0% similar) in 225 aa overlap (13-228:22-240) 10 20 30 40 50 pF1KE5 MRIFAVFIFMTYWH-LLNAFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDL : : .:. : ::.: :. :.. :. :.: : ..: CCDS32 MLRRRGSPGMGVHVGAALGALWFCLTGALEVQVPEDPVVALVGTDATLCCSFSPEPGFSL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 AALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAG : : . :.. : . :.::. . . : :.: .:. :. : :. :::.:.. :.. : : CCDS32 AQLNLIWQLTDTK--QLVHSFAEGQDQGSAYANRTALFPDLLAQGNASLRLQRVRVADEG 70 80 90 100 110 120 130 140 150 160 pF1KE5 VYRCMISYGGADYKRITVKVNAPYNKI------NQRILVVDPVTSEHELTCQA-EGYPKA . :..: ....: :::.: :. . : :: .::.. .:::.: CCDS32 SFTCFVSIRDFGSAAVSLQVAAPYSKPSMTLEPNKDLRPGDTVT----ITCSSYQGYPEA 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE5 EVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRR-LDPEENHTA ::.: ... :.:..::.. :. ::.: : ::. .: . : : . .. :.. CCDS32 EVFWQDGQGVPLTGNVTTSQMANEQGLFDVHSILRVVLGANGTYSCLVRNPVLQQDAHSS 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE5 ELVIPELPLAHPPNERTHLVILGAILLCLGVALTFIFRLRKGRMMDVKKCGIQDTNSKKQ . :. CCDS32 VTITPQRSPTGAVEVQVPEDPVVALVGTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLV 240 250 260 270 280 290 >>CCDS6465.1 PDCD1LG2 gene_id:80380|Hs108|chr9 (273 aa) initn: 362 init1: 208 opt: 366 Z-score: 388.9 bits: 79.8 E(32554): 2.4e-15 Smith-Waterman score: 494; 38.6% identity (65.4% similar) in 280 aa overlap (14-288:15-268) 10 20 30 40 50 pF1KE5 MRIFAVFIFMTYWHLLNA-FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWE : . : :::::::.::..:.:::.:.::.: . ....:.:. . CCDS64 MIFLLLMLSLELQLHQIAALFTVTVPKELYIIEHGSNVTLECNFDTGSHVNLGAITAS-- 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 MEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY .: : :.: : .:.:: ::..:: ::.:...: .:...: : :.:.: : CCDS64 ------LQKV--ENDT----SPHRERATLLEEQLPLGKASFHIPQVQVRDEGQYQCIIIY 60 70 80 90 100 120 130 140 150 160 170 pF1KE5 GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSG : : ::: .:.::.: : ::: .:: : : :.: :::::: ::: ::: : . .: CCDS64 GVAWDYKYLTLKVKASYRKINTHILKV-PETDEVELTCQATGYPLAEVSWPN-----VSV 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE5 KTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNE ..:..:. : :..:::.::.. .. : :.: ..:. ::.. . : . CCDS64 PANTSHSRTPEGLYQVTSVLRLKPPPGRNFSCVFW-----NTHVRELTLASIDLQSQMEP 170 180 190 200 210 240 250 260 270 280 290 pF1KE5 RTHLVILGAILL--CLGVALTFIFRLRKGRMMDVKKC-GIQDTNSKKQSDTHLEET ::: . : :.. :. .:. :: . : . .: . .::... . :. : CCDS64 RTHPTWLLHIFIPFCI-IAFIFIATVIALRKQLCQKLYSSKDTTKRPVTTTKREVNSAI 220 230 240 250 260 270 290 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:51:28 2016 done: Mon Nov 7 23:51:28 2016 Total Scan time: 2.320 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]