FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7044, 472 aa 1>>>pF1KB7044 472 - 472 aa - 472 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.4354+/-0.000874; mu= 2.5337+/- 0.053 mean_var=280.5525+/-56.276, 0's: 0 Z-trim(116.5): 12 B-trim: 0 in 0/55 Lambda= 0.076572 statistics sampled from 17104 (17115) to 17104 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.526), width: 16 Scan time: 3.530 The best scores are: opt bits E(32554) CCDS6443.1 DMRT3 gene_id:58524|Hs108|chr9 ( 472) 3218 368.3 9.7e-102 >>CCDS6443.1 DMRT3 gene_id:58524|Hs108|chr9 (472 aa) initn: 3218 init1: 3218 opt: 3218 Z-score: 1940.0 bits: 368.3 E(32554): 9.7e-102 Smith-Waterman score: 3218; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472) 10 20 30 40 50 60 pF1KB7 MNGYGSPYLYMGGPVSQPPRAPLQRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 MNGYGSPYLYMGGPVSQPPRAPLQRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCIL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 IIERQRVMAAQVALRRQQANESLESLIPDSLRALPGPPPPGDAVAAPQPPPASQPSQPQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 IIERQRVMAAQVALRRQQANESLESLIPDSLRALPGPPPPGDAVAAPQPPPASQPSQPQP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 PRPAAELAAAAALRWTAEPQPGALQAQLAKPDLTEERLGDGKSADNTEVFSDKDTDQRSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 PRPAAELAAAAALRWTAEPQPGALQAQLAKPDLTEERLGDGKSADNTEVFSDKDTDQRSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 PDVAKSKGCFTPESPEIVSVEEGGYAVQKNGGNPESRPDSPKCHAEQNHLLIEGPSGTVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 PDVAKSKGCFTPESPEIVSVEEGGYAVQKNGGNPESRPDSPKCHAEQNHLLIEGPSGTVS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 LPFSLKANRPPLEVLKKIFPNQKPTVLELILKGCGGDLVSAVEVLLSSRSSVTGAERTSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 LPFSLKANRPPLEVLKKIFPNQKPTVLELILKGCGGDLVSAVEVLLSSRSSVTGAERTSA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 EPESLALPSNGHIFEHTLSSYPISSSKWSVGSAFRVPDTLRFSADSSNVVPSPLAGPLQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 EPESLALPSNGHIFEHTLSSYPISSSKWSVGSAFRVPDTLRFSADSSNVVPSPLAGPLQP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB7 PFPQPPRYPLMLRNTLARSQSSPFLPNDVTLWNTMTLQQQYQLRSQYVSPFPSNSTSVFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 PFPQPPRYPLMLRNTLARSQSSPFLPNDVTLWNTMTLQQQYQLRSQYVSPFPSNSTSVFR 370 380 390 400 410 420 430 440 450 460 470 pF1KB7 SSPVLPARATEDPRISIPDDGCPFVSKQSIYTEDDYDERSDSSDSRTLNTSS :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS64 SSPVLPARATEDPRISIPDDGCPFVSKQSIYTEDDYDERSDSSDSRTLNTSS 430 440 450 460 470 472 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:17:40 2016 done: Tue Nov 8 04:17:40 2016 Total Scan time: 3.530 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]