FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3013, 103 aa 1>>>pF1KE3013 103 - 103 aa - 103 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2838+/-0.000298; mu= 9.6948+/- 0.019 mean_var=68.2504+/-13.373, 0's: 0 Z-trim(118.5): 34 B-trim: 48 in 1/51 Lambda= 0.155246 statistics sampled from 31484 (31518) to 31484 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.37), width: 16 Scan time: 4.150 The best scores are: opt bits E(85289) NP_065160 (OMIM: 248300,606119) secreted Ly-6/uPAR ( 103) 724 170.1 5.5e-43 NP_005663 (OMIM: 602470) prostate stem cell antige ( 114) 162 44.3 4.6e-05 NP_001120685 (OMIM: 601384) lymphocyte antigen 6E ( 131) 141 39.6 0.0014 NP_002337 (OMIM: 601384) lymphocyte antigen 6E pre ( 131) 141 39.6 0.0014 NP_803253 (OMIM: 606110) ly-6/neurotoxin-like prot ( 97) 139 39.1 0.0014 NP_001120699 (OMIM: 107271,612300) CD59 glycoprote ( 128) 140 39.4 0.0016 NP_001120698 (OMIM: 107271,612300) CD59 glycoprote ( 128) 140 39.4 0.0016 NP_976076 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 140 39.4 0.0016 NP_001120695 (OMIM: 107271,612300) CD59 glycoprote ( 128) 140 39.4 0.0016 NP_976074 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 140 39.4 0.0016 NP_001120697 (OMIM: 107271,612300) CD59 glycoprote ( 128) 140 39.4 0.0016 NP_976075 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 140 39.4 0.0016 NP_000602 (OMIM: 107271,612300) CD59 glycoprotein ( 128) 140 39.4 0.0016 NP_003686 (OMIM: 606204) lymphocyte antigen 6D pre ( 128) 139 39.2 0.0018 NP_803430 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 132 37.6 0.005 NP_803429 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 132 37.6 0.005 NP_803252 (OMIM: 606110) ly-6/neurotoxin-like prot ( 116) 132 37.6 0.005 >>NP_065160 (OMIM: 248300,606119) secreted Ly-6/uPAR-rel (103 aa) initn: 724 init1: 724 opt: 724 Z-score: 892.8 bits: 170.1 E(85289): 5.5e-43 Smith-Waterman score: 724; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_065 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE 10 20 30 40 50 60 70 80 90 100 pF1KE3 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL ::::::::::::::::::::::::::::::::::::::::::: NP_065 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL 70 80 90 100 >>NP_005663 (OMIM: 602470) prostate stem cell antigen pr (114 aa) initn: 143 init1: 83 opt: 162 Z-score: 211.8 bits: 44.3 E(85289): 4.6e-05 Smith-Waterman score: 162; 27.8% identity (53.3% similar) in 90 aa overlap (12-101:1-85) 10 20 30 40 50 60 pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE .:. .. : :: ::.:: ... .: . : : :. . . NP_005 MAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRA--- 10 20 30 40 70 80 90 100 pF1KE3 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL . :....:: .:: . : . . : :: ::::. NP_005 --VGLLTVISKGCSLNCVDDSQDYYVGKKNITCCDTDLCNASGAHALQPAAAILALLPAL 50 60 70 80 90 100 NP_005 GLLLWGPGQL 110 >>NP_001120685 (OMIM: 601384) lymphocyte antigen 6E prec (131 aa) initn: 60 init1: 43 opt: 141 Z-score: 185.5 bits: 39.6 E(85289): 0.0014 Smith-Waterman score: 141; 26.3% identity (58.9% similar) in 95 aa overlap (9-100:7-99) 10 20 30 40 50 pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVT--VE .::.: .. . .: :..: . .. : : :. .:. :.:. .. . NP_001 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIG 10 20 30 40 50 60 70 80 90 100 pF1KE3 AEYPFNQSPVVTRSCSSSCVATDPDSIGAAHL-IFCCFRDLCNSEL :..: ....:: .: . ..:.: . : :: ::: NP_001 NLVTFGHS--LSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGA 60 70 80 90 100 110 NP_001 GLLLSLLPALLRFGP 120 130 >>NP_002337 (OMIM: 601384) lymphocyte antigen 6E precurs (131 aa) initn: 60 init1: 43 opt: 141 Z-score: 185.5 bits: 39.6 E(85289): 0.0014 Smith-Waterman score: 141; 26.3% identity (58.9% similar) in 95 aa overlap (9-100:7-99) 10 20 30 40 50 pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVT--VE .::.: .. . .: :..: . .. : : :. .:. :.:. .. . NP_002 MKIFLPVLLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIG 10 20 30 40 50 60 70 80 90 100 pF1KE3 AEYPFNQSPVVTRSCSSSCVATDPDSIGAAHL-IFCCFRDLCNSEL :..: ....:: .: . ..:.: . : :: ::: NP_002 NLVTFGHS--LSKTCSPACPIPEGVNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGA 60 70 80 90 100 110 NP_002 GLLLSLLPALLRFGP 120 130 >>NP_803253 (OMIM: 606110) ly-6/neurotoxin-like protein (97 aa) initn: 123 init1: 58 opt: 139 Z-score: 185.0 bits: 39.1 E(85289): 0.0014 Smith-Waterman score: 139; 30.2% identity (56.2% similar) in 96 aa overlap (9-102:7-97) 10 20 30 40 50 pF1KE3 MASRWAVQLLLVAAWSM--GCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVE :::.:. :. . .::. :. : ..: .:: ..: :.:: . : NP_803 MQLGTGLLLAAVLSLQLAAAEAIWCHQC---TGFGGCSHGSRCLRDSTHCVTTATRVL 10 20 30 40 50 60 70 80 90 100 pF1KE3 AEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL .. .. :.::. : .: ..: : :: .::: . NP_803 SNT--EDLPLVTKMCHIGCPDIPSLGLGPYVSIACCQTSLCNHD 60 70 80 90 >>NP_001120699 (OMIM: 107271,612300) CD59 glycoprotein p (128 aa) initn: 128 init1: 71 opt: 140 Z-score: 184.5 bits: 39.4 E(85289): 0.0016 Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (9-100:12-95) 10 20 30 40 50 pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV :::: : :..:.::.: .: .:.:.: . :. . ::. : . . NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL 10 20 30 40 50 60 70 80 90 100 pF1KE3 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL .. .:. . :. . :.: . .: . :: .:::: NP_001 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT 60 70 80 90 100 110 NP_001 VLLLVTPFLAAAWSLHP 120 >>NP_001120698 (OMIM: 107271,612300) CD59 glycoprotein p (128 aa) initn: 128 init1: 71 opt: 140 Z-score: 184.5 bits: 39.4 E(85289): 0.0016 Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (9-100:12-95) 10 20 30 40 50 pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV :::: : :..:.::.: .: .:.:.: . :. . ::. : . . NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL 10 20 30 40 50 60 70 80 90 100 pF1KE3 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL .. .:. . :. . :.: . .: . :: .:::: NP_001 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT 60 70 80 90 100 110 NP_001 VLLLVTPFLAAAWSLHP 120 >>NP_976076 (OMIM: 107271,612300) CD59 glycoprotein prep (128 aa) initn: 128 init1: 71 opt: 140 Z-score: 184.5 bits: 39.4 E(85289): 0.0016 Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (9-100:12-95) 10 20 30 40 50 pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV :::: : :..:.::.: .: .:.:.: . :. . ::. : . . NP_976 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL 10 20 30 40 50 60 70 80 90 100 pF1KE3 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL .. .:. . :. . :.: . .: . :: .:::: NP_976 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT 60 70 80 90 100 110 NP_976 VLLLVTPFLAAAWSLHP 120 >>NP_001120695 (OMIM: 107271,612300) CD59 glycoprotein p (128 aa) initn: 128 init1: 71 opt: 140 Z-score: 184.5 bits: 39.4 E(85289): 0.0016 Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (9-100:12-95) 10 20 30 40 50 pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV :::: : :..:.::.: .: .:.:.: . :. . ::. : . . NP_001 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL 10 20 30 40 50 60 70 80 90 100 pF1KE3 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL .. .:. . :. . :.: . .: . :: .:::: NP_001 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT 60 70 80 90 100 110 NP_001 VLLLVTPFLAAAWSLHP 120 >>NP_976074 (OMIM: 107271,612300) CD59 glycoprotein prep (128 aa) initn: 128 init1: 71 opt: 140 Z-score: 184.5 bits: 39.4 E(85289): 0.0016 Smith-Waterman score: 141; 31.2% identity (59.1% similar) in 93 aa overlap (9-100:12-95) 10 20 30 40 50 pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTV :::: : :..:.::.: .: .:.:.: . :. . ::. : . . NP_976 MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNP--TADCKTAVNCSSDFDACLITKAGL 10 20 30 40 50 60 70 80 90 100 pF1KE3 EAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIF-CCFRDLCNSEL .. .:. . :. . :.: . .: . :: .:::: NP_976 QV---YNKCWKFEH-CNFNDVTT---RLRENELTYYCCKKDLCNFNEQLENGGTSLSEKT 60 70 80 90 100 110 NP_976 VLLLVTPFLAAAWSLHP 120 103 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:29:30 2016 done: Sun Nov 6 04:29:31 2016 Total Scan time: 4.150 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]