FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3013, 103 aa 1>>>pF1KE3013 103 - 103 aa - 103 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8226+/-0.000672; mu= 12.5844+/- 0.041 mean_var=71.1282+/-13.833, 0's: 0 Z-trim(111.6): 30 B-trim: 44 in 1/49 Lambda= 0.152073 statistics sampled from 12472 (12498) to 12472 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.384), width: 16 Scan time: 1.320 The best scores are: opt bits E(32554) CCDS6387.1 SLURP1 gene_id:57152|Hs108|chr8 ( 103) 724 166.8 2.2e-42 CCDS6388.1 LYPD2 gene_id:137797|Hs108|chr8 ( 125) 277 68.8 8.3e-13 >>CCDS6387.1 SLURP1 gene_id:57152|Hs108|chr8 (103 aa) initn: 724 init1: 724 opt: 724 Z-score: 874.5 bits: 166.8 E(32554): 2.2e-42 Smith-Waterman score: 724; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 pF1KE3 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 MASRWAVQLLLVAAWSMGCGEALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAE 10 20 30 40 50 60 70 80 90 100 pF1KE3 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL ::::::::::::::::::::::::::::::::::::::::::: CCDS63 YPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL 70 80 90 100 >>CCDS6388.1 LYPD2 gene_id:137797|Hs108|chr8 (125 aa) initn: 261 init1: 261 opt: 277 Z-score: 343.4 bits: 68.8 E(32554): 8.3e-13 Smith-Waterman score: 277; 42.6% identity (65.3% similar) in 101 aa overlap (3-100:4-100) 10 20 30 40 50 pF1KE3 MASRWAVQLLLVAAWSMGCGE---ALKCYTCKEPMTSASCRTITRCKPEDTACMTTLVT .: :. :..:: ::: ::.::.: :: ..: ::. : ..: : ::: . CCDS63 MRGTRLALLALVLAA----CGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYS 10 20 30 40 50 60 70 80 90 100 pF1KE3 VEAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL : :::. . .::.::.:.: .: :.:: . . :: .::: CCDS63 REIVYPFQGDSTVTKSCASKCKPSDVDGIGQTLPVSCCNTELCNVDGAPALNSLHCGALT 60 70 80 90 100 110 CCDS63 LLPLLSLRL 120 103 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:29:29 2016 done: Sun Nov 6 04:29:29 2016 Total Scan time: 1.320 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]