Result of FASTA (omim) for
pFN21AE5348
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5348, 285 aa
1>>>pF1KE5348 285 - 285 aa - 285 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8306+/-0.000366; mu= 12.6410+/- 0.023
mean_var=86.3515+/-17.208, 0's: 0 Z-trim(115.3): 82 B-trim: 759 in 1/54
Lambda= 0.138019
statistics sampled from 25511 (25597) to 25511 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.3), width: 16
Scan time: 6.790
The best scores are: opt bits E(85289)
XP_016883355 (OMIM: 610335) PREDICTED: PHD finger (1012) 677 145.0 5.7e-34
XP_016883354 (OMIM: 610335) PREDICTED: PHD finger (1012) 677 145.0 5.7e-34
XP_016883353 (OMIM: 610335) PREDICTED: PHD finger (1012) 677 145.0 5.7e-34
XP_016883356 (OMIM: 610335) PREDICTED: PHD finger (1012) 677 145.0 5.7e-34
NP_057520 (OMIM: 610335) PHD finger protein 20 [Ho (1012) 677 145.0 5.7e-34
XP_016883357 (OMIM: 610335) PREDICTED: PHD finger ( 957) 441 98.0 7.6e-20
>>XP_016883355 (OMIM: 610335) PREDICTED: PHD finger prot (1012 aa)
initn: 735 init1: 643 opt: 677 Z-score: 730.9 bits: 145.0 E(85289): 5.7e-34
Smith-Waterman score: 685; 44.8% identity (70.1% similar) in 241 aa overlap (1-238:1-230)
10 20 30 40 50 60
pF1KE5 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
:.:.:::: ::.::.::.::: : :..:::..:: :::::::.:.::.::.::::::. :
XP_016 MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
:: :::::. ::::::..:. .:. .:.::: :.:::.::::. :.::.::.::.:
XP_016 DSPYLRPLEKIQLRKEGLHEEDGSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER
::::.. .:..:.::. .: :. .. : ..: : .:. ....: :..:
XP_016 YDGVVQTVKHIHVKAFSKD---QNIVG-------NARPKETDHKSLSSSPDKREKFKEQR
130 140 150 160 170
190 200 210 220 230
pF1KE5 KWFKVPSKKEETSTCIAT---PDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKR
: : ::.. . . : : :: :: . ...:: . :. : :
XP_016 KA-TVNVKKDKEDKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDR
180 190 200 210 220
240 250 260 270 280
pF1KE5 KNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV
.
XP_016 EYSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRK
230 240 250 260 270 280
>>XP_016883354 (OMIM: 610335) PREDICTED: PHD finger prot (1012 aa)
initn: 735 init1: 643 opt: 677 Z-score: 730.9 bits: 145.0 E(85289): 5.7e-34
Smith-Waterman score: 685; 44.8% identity (70.1% similar) in 241 aa overlap (1-238:1-230)
10 20 30 40 50 60
pF1KE5 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
:.:.:::: ::.::.::.::: : :..:::..:: :::::::.:.::.::.::::::. :
XP_016 MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
:: :::::. ::::::..:. .:. .:.::: :.:::.::::. :.::.::.::.:
XP_016 DSPYLRPLEKIQLRKEGLHEEDGSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER
::::.. .:..:.::. .: :. .. : ..: : .:. ....: :..:
XP_016 YDGVVQTVKHIHVKAFSKD---QNIVG-------NARPKETDHKSLSSSPDKREKFKEQR
130 140 150 160 170
190 200 210 220 230
pF1KE5 KWFKVPSKKEETSTCIAT---PDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKR
: : ::.. . . : : :: :: . ...:: . :. : :
XP_016 KA-TVNVKKDKEDKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDR
180 190 200 210 220
240 250 260 270 280
pF1KE5 KNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV
.
XP_016 EYSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRK
230 240 250 260 270 280
>>XP_016883353 (OMIM: 610335) PREDICTED: PHD finger prot (1012 aa)
initn: 735 init1: 643 opt: 677 Z-score: 730.9 bits: 145.0 E(85289): 5.7e-34
Smith-Waterman score: 685; 44.8% identity (70.1% similar) in 241 aa overlap (1-238:1-230)
10 20 30 40 50 60
pF1KE5 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
:.:.:::: ::.::.::.::: : :..:::..:: :::::::.:.::.::.::::::. :
XP_016 MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
:: :::::. ::::::..:. .:. .:.::: :.:::.::::. :.::.::.::.:
XP_016 DSPYLRPLEKIQLRKEGLHEEDGSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER
::::.. .:..:.::. .: :. .. : ..: : .:. ....: :..:
XP_016 YDGVVQTVKHIHVKAFSKD---QNIVG-------NARPKETDHKSLSSSPDKREKFKEQR
130 140 150 160 170
190 200 210 220 230
pF1KE5 KWFKVPSKKEETSTCIAT---PDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKR
: : ::.. . . : : :: :: . ...:: . :. : :
XP_016 KA-TVNVKKDKEDKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDR
180 190 200 210 220
240 250 260 270 280
pF1KE5 KNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV
.
XP_016 EYSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRK
230 240 250 260 270 280
>>XP_016883356 (OMIM: 610335) PREDICTED: PHD finger prot (1012 aa)
initn: 735 init1: 643 opt: 677 Z-score: 730.9 bits: 145.0 E(85289): 5.7e-34
Smith-Waterman score: 685; 44.8% identity (70.1% similar) in 241 aa overlap (1-238:1-230)
10 20 30 40 50 60
pF1KE5 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
:.:.:::: ::.::.::.::: : :..:::..:: :::::::.:.::.::.::::::. :
XP_016 MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
:: :::::. ::::::..:. .:. .:.::: :.:::.::::. :.::.::.::.:
XP_016 DSPYLRPLEKIQLRKEGLHEEDGSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER
::::.. .:..:.::. .: :. .. : ..: : .:. ....: :..:
XP_016 YDGVVQTVKHIHVKAFSKD---QNIVG-------NARPKETDHKSLSSSPDKREKFKEQR
130 140 150 160 170
190 200 210 220 230
pF1KE5 KWFKVPSKKEETSTCIAT---PDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKR
: : ::.. . . : : :: :: . ...:: . :. : :
XP_016 KA-TVNVKKDKEDKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDR
180 190 200 210 220
240 250 260 270 280
pF1KE5 KNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV
.
XP_016 EYSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRK
230 240 250 260 270 280
>>NP_057520 (OMIM: 610335) PHD finger protein 20 [Homo s (1012 aa)
initn: 735 init1: 643 opt: 677 Z-score: 730.9 bits: 145.0 E(85289): 5.7e-34
Smith-Waterman score: 685; 44.8% identity (70.1% similar) in 241 aa overlap (1-238:1-230)
10 20 30 40 50 60
pF1KE5 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
:.:.:::: ::.::.::.::: : :..:::..:: :::::::.:.::.::.::::::. :
NP_057 MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
:: :::::. ::::::..:. .:. .:.::: :.:::.::::. :.::.::.::.:
NP_057 DSPYLRPLEKIQLRKEGLHEEDGSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER
::::.. .:..:.::. .: :. .. : ..: : .:. ....: :..:
NP_057 YDGVVQTVKHIHVKAFSKD---QNIVG-------NARPKETDHKSLSSSPDKREKFKEQR
130 140 150 160 170
190 200 210 220 230
pF1KE5 KWFKVPSKKEETSTCIAT---PDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKR
: : ::.. . . : : :: :: . ...:: . :. : :
NP_057 KA-TVNVKKDKEDKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDR
180 190 200 210 220
240 250 260 270 280
pF1KE5 KNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV
.
NP_057 EYSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRK
230 240 250 260 270 280
>>XP_016883357 (OMIM: 610335) PREDICTED: PHD finger prot (957 aa)
initn: 479 init1: 418 opt: 441 Z-score: 477.3 bits: 98.0 E(85289): 7.6e-20
Smith-Waterman score: 442; 34.9% identity (58.5% similar) in 272 aa overlap (1-262:1-258)
10 20 30 40 50 60
pF1KE5 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
:.:.:::: ::.::.::.::: : :..:::..:: :::::::.:.::.::.::::::. :
XP_016 MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCW
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYY---PAKIEAINKEGTFT
:: :::::. ::::::. ::: . .:. . . :: . : : : .... :
XP_016 DSPYLRPLEKIQLRKEGLH-EEDGSSNIVGN-ARPKETDHKSLSSSPDKREKFKEQRKAT
70 80 90 100 110
120 130 140 150 160 170
pF1KE5 VQFY-DGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKD
:. : . :: . .: : .: : . .: . : :.. ..... .
XP_016 VNVKKDKEDKPLKTEKRPKQP-DKEG-------KLICSEKGKVSEKSLPKNEKEDKENIS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 KDERKWF-KVPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVPKMVFP-----QPE
...:.. . :. . . .: .:.: .. : .: : ::
XP_016 ENDREYSGDAQVDKKPENDIVKSP----QENLREPKRKRGRPPSIAPTAVDSNSQTLQPI
180 190 200 210 220
240 250 260 270 280
pF1KE5 STLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV
. .:: ..: :: ::.: .. ::
XP_016 TLELRRRKISKGCEVPLKRPRLDKNSSQEKSKNYSENTDKDLSRRRSSRLSTNGTHEILD
230 240 250 260 270 280
XP_016 PDLVVSDLVDTDPLQDTLSSTKESEEGQLKSALEAGQVSSALTCHSFGDGSGAAGLELNC
290 300 310 320 330 340
285 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:00:18 2016 done: Tue Nov 8 00:00:19 2016
Total Scan time: 6.790 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]