Result of FASTA (ccds) for
pFN21AE5348
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5348, 285 aa
1>>>pF1KE5348 285 - 285 aa - 285 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7108+/-0.000864; mu= 13.3754+/- 0.052
mean_var=78.2613+/-15.875, 0's: 0 Z-trim(108.1): 36 B-trim: 343 in 3/50
Lambda= 0.144978
statistics sampled from 9956 (9983) to 9956 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.307), width: 16
Scan time: 2.350
The best scores are: opt bits E(32554)
CCDS6368.1 PHF20L1 gene_id:51105|Hs108|chr8 ( 285) 1925 411.9 2.6e-115
CCDS75791.1 PHF20L1 gene_id:51105|Hs108|chr8 ( 991) 1920 411.2 1.5e-114
CCDS6367.2 PHF20L1 gene_id:51105|Hs108|chr8 (1017) 1010 220.9 3.1e-57
CCDS13268.1 PHF20 gene_id:51230|Hs108|chr20 (1012) 677 151.2 2.8e-36
>>CCDS6368.1 PHF20L1 gene_id:51105|Hs108|chr8 (285 aa)
initn: 1925 init1: 1925 opt: 1925 Z-score: 2183.6 bits: 411.9 E(32554): 2.6e-115
Smith-Waterman score: 1925; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)
10 20 30 40 50 60
pF1KE5 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 KWFKVPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKRKNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KWFKVPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKRKNN
190 200 210 220 230 240
250 260 270 280
pF1KE5 QGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV
:::::::::::::::::::::::::::::::::::::::::::::
CCDS63 QGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV
250 260 270 280
>>CCDS75791.1 PHF20L1 gene_id:51105|Hs108|chr8 (991 aa)
initn: 1920 init1: 1920 opt: 1920 Z-score: 2169.9 bits: 411.2 E(32554): 1.5e-114
Smith-Waterman score: 1920; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KE5 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 KWFKVPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKRKNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KWFKVPSKKEETSTCIATPDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKRKNN
190 200 210 220 230 240
250 260 270 280
pF1KE5 QGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV
::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQAISPKPQSQKKNEADI
250 260 270 280 290 300
CCDS75 SSSANTQKPALLSSTLSSGKARSKKCKHESGDSSGCIKPPKSPLSPELIQVEDLTLVSQL
310 320 330 340 350 360
>>CCDS6367.2 PHF20L1 gene_id:51105|Hs108|chr8 (1017 aa)
initn: 1063 init1: 1010 opt: 1010 Z-score: 1141.1 bits: 220.9 E(32554): 3.1e-57
Smith-Waterman score: 1858; 91.6% identity (91.6% similar) in 310 aa overlap (1-284:1-310)
10 20 30 40 50 60
pF1KE5 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
70 80 90 100 110 120
130 140 150
pF1KE5 YDGVIRCLKRMHIKAMPEDAKGQ--------------------------DWIALVKAAAA
::::::::::::::::::::::: :::::::::::
CCDS63 YDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAGSCNQSMGSEDWIALVKAAAA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE5 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 AAAKNKTGSKPRTSANSNKDKDKDERKWFKVPSKKEETSTCIATPDVEKKEDLPTSSETF
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE5 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GLHVENVPKMVFPQPESTLSNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKED
250 260 270 280 290 300
280
pF1KE5 YNETAPMLEQV
::::::::::
CCDS63 YNETAPMLEQAISPKPQSQKKNEADISSSANTQKPALLSSTLSSGKARSKKCKHESGDSS
310 320 330 340 350 360
>>CCDS13268.1 PHF20 gene_id:51230|Hs108|chr20 (1012 aa)
initn: 735 init1: 643 opt: 677 Z-score: 764.7 bits: 151.2 E(32554): 2.8e-36
Smith-Waterman score: 685; 44.8% identity (70.1% similar) in 241 aa overlap (1-238:1-230)
10 20 30 40 50 60
pF1KE5 MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYW
:.:.:::: ::.::.::.::: : :..:::..:: :::::::.:.::.::.::::::. :
CCDS13 MTKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 DSNRLRPLERPALRKEGLKDEEDFFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF
:: :::::. ::::::..:. .:. .:.::: :.:::.::::. :.::.::.::.:
CCDS13 DSPYLRPLEKIQLRKEGLHEEDGSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 YDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGSKPRTSANSNKDKDKDER
::::.. .:..:.::. .: :. .. : ..: : .:. ....: :..:
CCDS13 YDGVVQTVKHIHVKAFSKD---QNIVG-------NARPKETDHKSLSSSPDKREKFKEQR
130 140 150 160 170
190 200 210 220 230
pF1KE5 KWFKVPSKKEETSTCIAT---PDVEKKEDLPTSSETFGLHVENVPKMVFPQPESTLSNKR
: : ::.. . . : : :: :: . ...:: . :. : :
CCDS13 KA-TVNVKKDKEDKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENISENDR
180 190 200 210 220
240 250 260 270 280
pF1KE5 KNNQGNSFQAKRARLNKITGLLASKAVGVDGAEKKEDYNETAPMLEQV
.
CCDS13 EYSGDAQVDKKPENDIVKSPQENLREPKRKRGRPPSIAPTAVDSNSQTLQPITLELRRRK
230 240 250 260 270 280
285 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:00:17 2016 done: Tue Nov 8 00:00:18 2016
Total Scan time: 2.350 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]