FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6175, 111 aa 1>>>pF1KE6175 111 - 111 aa - 111 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2842+/-0.000649; mu= 10.3498+/- 0.039 mean_var=65.1248+/-12.957, 0's: 0 Z-trim(110.4): 8 B-trim: 0 in 0/51 Lambda= 0.158928 statistics sampled from 11592 (11594) to 11592 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.356), width: 16 Scan time: 1.110 The best scores are: opt bits E(32554) CCDS6269.1 UQCRB gene_id:7381|Hs108|chr8 ( 111) 752 180.3 2.2e-46 CCDS59107.1 UQCRB gene_id:7381|Hs108|chr8 ( 140) 584 141.8 1.1e-34 >>CCDS6269.1 UQCRB gene_id:7381|Hs108|chr8 (111 aa) initn: 752 init1: 752 opt: 752 Z-score: 946.2 bits: 180.3 E(32554): 2.2e-46 Smith-Waterman score: 752; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111) 10 20 30 40 50 60 pF1KE6 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK 70 80 90 100 110 >>CCDS59107.1 UQCRB gene_id:7381|Hs108|chr8 (140 aa) initn: 584 init1: 584 opt: 584 Z-score: 736.5 bits: 141.8 E(32554): 1.1e-34 Smith-Waterman score: 584; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86) 10 20 30 40 50 60 pF1KE6 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK :::::::::::::::::::::::::: CCDS59 FRIKRALDLNLKHQILPKEQWTKYEEVFAVPALHSASYLDEKISPLSVPPDPKKSFCEAN 70 80 90 100 110 120 111 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:05:25 2016 done: Tue Nov 8 10:05:25 2016 Total Scan time: 1.110 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]