FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6502, 207 aa 1>>>pF1KE6502 207 - 207 aa - 207 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2994+/-0.000301; mu= 14.2618+/- 0.019 mean_var=70.0852+/-14.010, 0's: 0 Z-trim(117.4): 2 B-trim: 92 in 1/49 Lambda= 0.153201 statistics sampled from 29423 (29425) to 29423 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.345), width: 16 Scan time: 3.540 The best scores are: opt bits E(85289) NP_808880 (OMIM: 268000,614477,614500) protein C8o ( 207) 1438 326.2 2.3e-89 XP_005250856 (OMIM: 268000,614477,614500) PREDICTE ( 288) 828 191.5 1.2e-48 >>NP_808880 (OMIM: 268000,614477,614500) protein C8orf37 (207 aa) initn: 1438 init1: 1438 opt: 1438 Z-score: 1725.2 bits: 326.2 E(85289): 2.3e-89 Smith-Waterman score: 1438; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207) 10 20 30 40 50 60 pF1KE6 MAEDLDELLDEVESKFCTPDLLRRGMVEQPKGCGGGTHSSDRNQAKAKETLRSTETFKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_808 MAEDLDELLDEVESKFCTPDLLRRGMVEQPKGCGGGTHSSDRNQAKAKETLRSTETFKKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DDLDSLINEILEEPNLDKKPSKLKSKSSGNTSVRASIEGLGKSCSPVYLGGSSIPCGIGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_808 DDLDSLINEILEEPNLDKKPSKLKSKSSGNTSVRASIEGLGKSCSPVYLGGSSIPCGIGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 NISWRACDHLRCIACDFLVVSYDDYMWDKSCDYLFFRNNMPEFHKLKAKLIKKKGTRAYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_808 NISWRACDHLRCIACDFLVVSYDDYMWDKSCDYLFFRNNMPEFHKLKAKLIKKKGTRAYA 130 140 150 160 170 180 190 200 pF1KE6 CQCSWRTIEEVTDLQTDHQLRWVCGKH ::::::::::::::::::::::::::: NP_808 CQCSWRTIEEVTDLQTDHQLRWVCGKH 190 200 >>XP_005250856 (OMIM: 268000,614477,614500) PREDICTED: p (288 aa) initn: 828 init1: 828 opt: 828 Z-score: 994.5 bits: 191.5 E(85289): 1.2e-48 Smith-Waterman score: 1114; 84.5% identity (84.5% similar) in 207 aa overlap (1-207:114-288) 10 20 30 pF1KE6 MAEDLDELLDEVESKFCTPDLLRRGMVEQP :::::::::::::::::::::::::::::: XP_005 NGAGARQVPSLLLETTGALAIGGEKARRFKMAEDLDELLDEVESKFCTPDLLRRGMVEQP 90 100 110 120 130 140 40 50 60 70 80 90 pF1KE6 KGCGGGTHSSDRNQAKAKETLRSTETFKKEDDLDSLINEILEEPNLDKKPSKLKSKSSGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KGCGGGTHSSDRNQAKAKETLRSTETFKKEDDLDSLINEILEEPNLDKKPSKLKSKSSGN 150 160 170 180 190 200 100 110 120 130 140 150 pF1KE6 TSVRASIEGLGKSCSPVYLGGSSIPCGIGTNISWRACDHLRCIACDFLVVSYDDYMWDKS ::::::::::::::::::::::::::::::::::: XP_005 TSVRASIEGLGKSCSPVYLGGSSIPCGIGTNISWR------------------------- 210 220 230 160 170 180 190 200 pF1KE6 CDYLFFRNNMPEFHKLKAKLIKKKGTRAYACQCSWRTIEEVTDLQTDHQLRWVCGKH :::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 -------NNMPEFHKLKAKLIKKKGTRAYACQCSWRTIEEVTDLQTDHQLRWVCGKH 240 250 260 270 280 207 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:53:53 2016 done: Tue Nov 8 13:53:54 2016 Total Scan time: 3.540 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]