FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6502, 207 aa
  1>>>pF1KE6502 207 - 207 aa - 207 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3906+/-0.000699; mu= 13.6799+/- 0.042
 mean_var=70.4372+/-13.868, 0's: 0 Z-trim(110.2): 6  B-trim: 0 in 0/51
 Lambda= 0.152818
 statistics sampled from 11411 (11412) to 11411 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.351), width:  16
 Scan time:  1.580

The best scores are:                                      opt bits E(32554)
CCDS6268.1 C8orf37 gene_id:157657|Hs108|chr8       ( 207) 1438 325.4 1.5e-89


>>CCDS6268.1 C8orf37 gene_id:157657|Hs108|chr8            (207 aa)
 initn: 1438 init1: 1438 opt: 1438  Z-score: 1721.0  bits: 325.4 E(32554): 1.5e-89
Smith-Waterman score: 1438; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KE6 MAEDLDELLDEVESKFCTPDLLRRGMVEQPKGCGGGTHSSDRNQAKAKETLRSTETFKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MAEDLDELLDEVESKFCTPDLLRRGMVEQPKGCGGGTHSSDRNQAKAKETLRSTETFKKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DDLDSLINEILEEPNLDKKPSKLKSKSSGNTSVRASIEGLGKSCSPVYLGGSSIPCGIGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DDLDSLINEILEEPNLDKKPSKLKSKSSGNTSVRASIEGLGKSCSPVYLGGSSIPCGIGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 NISWRACDHLRCIACDFLVVSYDDYMWDKSCDYLFFRNNMPEFHKLKAKLIKKKGTRAYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 NISWRACDHLRCIACDFLVVSYDDYMWDKSCDYLFFRNNMPEFHKLKAKLIKKKGTRAYA
              130       140       150       160       170       180

              190       200       
pF1KE6 CQCSWRTIEEVTDLQTDHQLRWVCGKH
       :::::::::::::::::::::::::::
CCDS62 CQCSWRTIEEVTDLQTDHQLRWVCGKH
              190       200       




207 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:53:53 2016 done: Tue Nov  8 13:53:53 2016
 Total Scan time:  1.580 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]