FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1645, 160 aa 1>>>pF1KE1645 160 - 160 aa - 160 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7176+/-0.000371; mu= 14.5712+/- 0.023 mean_var=51.3254+/-10.523, 0's: 0 Z-trim(111.8): 32 B-trim: 80 in 1/49 Lambda= 0.179023 statistics sampled from 20483 (20510) to 20483 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.24), width: 16 Scan time: 3.570 The best scores are: opt bits E(85289) NP_056179 (OMIM: 605243) lymphocyte antigen 96 iso ( 160) 1083 287.3 7.1e-78 XP_011515810 (OMIM: 605243) PREDICTED: lymphocyte ( 138) 852 227.6 5.8e-60 XP_016868788 (OMIM: 605243) PREDICTED: lymphocyte ( 191) 852 227.7 7.6e-60 NP_001182726 (OMIM: 605243) lymphocyte antigen 96 ( 130) 615 166.4 1.5e-41 XP_016868789 (OMIM: 605243) PREDICTED: lymphocyte ( 161) 395 109.6 2.2e-24 NP_004262 (OMIM: 605241) lymphocyte antigen 86 pre ( 162) 142 44.3 0.0001 XP_016866994 (OMIM: 605241) PREDICTED: lymphocyte ( 189) 136 42.7 0.00035 >>NP_056179 (OMIM: 605243) lymphocyte antigen 96 isoform (160 aa) initn: 1083 init1: 1083 opt: 1083 Z-score: 1519.0 bits: 287.3 E(85289): 7.1e-78 Smith-Waterman score: 1083; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160) 10 20 30 40 50 60 pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS 70 80 90 100 110 120 130 140 150 160 pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN :::::::::::::::::::::::::::::::::::::::: NP_056 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN 130 140 150 160 >>XP_011515810 (OMIM: 605243) PREDICTED: lymphocyte anti (138 aa) initn: 852 init1: 852 opt: 852 Z-score: 1197.6 bits: 227.6 E(85289): 5.8e-60 Smith-Waterman score: 852; 99.2% identity (99.2% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: XP_011 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKRSKGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS 70 80 90 100 110 120 130 140 150 160 pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN :::::::: XP_011 FKGIKFSKEEEVKTKRQK 130 >>XP_016868788 (OMIM: 605243) PREDICTED: lymphocyte anti (191 aa) initn: 852 init1: 852 opt: 852 Z-score: 1195.4 bits: 227.7 E(85289): 7.6e-60 Smith-Waterman score: 852; 99.2% identity (99.2% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: XP_016 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKRSKGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS 70 80 90 100 110 120 130 140 150 160 pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN :::::::: XP_016 FKGIKFSKFWCNNRPAFLPDERQLTMEWFWPVYGECAAKVFLSSASSFDVRGPKTPPWDY 130 140 150 160 170 180 >>NP_001182726 (OMIM: 605243) lymphocyte antigen 96 isof (130 aa) initn: 856 init1: 615 opt: 615 Z-score: 867.2 bits: 166.4 E(85289): 1.5e-41 Smith-Waterman score: 797; 80.6% identity (80.6% similar) in 160 aa overlap (1-160:1-130) 10 20 30 40 50 60 pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL ::::::::::::::::::::::::::::::::::::: NP_001 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCG---------------------- 10 20 30 70 80 90 100 110 120 pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 --------RDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS 40 50 60 70 80 90 130 140 150 160 pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN :::::::::::::::::::::::::::::::::::::::: NP_001 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN 100 110 120 130 >>XP_016868789 (OMIM: 605243) PREDICTED: lymphocyte anti (161 aa) initn: 636 init1: 395 opt: 395 Z-score: 558.7 bits: 109.6 E(85289): 2.2e-24 Smith-Waterman score: 577; 75.8% identity (75.8% similar) in 128 aa overlap (1-128:1-98) 10 20 30 40 50 60 pF1KE1 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCDKMQYPISINVNPCIELKGSKGL ::::::::::::::::::::::::::::::::::::: XP_016 MLPFLFFSTLFSSIFTEAQKQYWVCNSSDASISYTYCG---------------------- 10 20 30 70 80 90 100 110 120 pF1KE1 LHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 --------RDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGETVNTTISFS 40 50 60 70 80 90 130 140 150 160 pF1KE1 FKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN :::::::: XP_016 FKGIKFSKFWCNNRPAFLPDERQLTMEWFWPVYGECAAKVFLSSASSFDVRGPKTPPWDY 100 110 120 130 140 150 >>NP_004262 (OMIM: 605241) lymphocyte antigen 86 precurs (162 aa) initn: 102 init1: 58 opt: 142 Z-score: 205.5 bits: 44.3 E(85289): 0.0001 Smith-Waterman score: 142; 24.8% identity (56.2% similar) in 137 aa overlap (5-136:8-143) 10 20 30 40 50 pF1KE1 MLPFLFFSTL-FSSIFTEAQKQYW----VCNSSDASISYTYCDKMQYPISINVNPCI ::. :: : : . . : ::..: . : :: .: ....:. : NP_004 MKGFTATLFLWTLIFPSCSGGGGGKAWPTHVVCSDSGLEVLYQSCDPLQ-DFGFSVEKCS 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 ELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGET . :. ... : :.:.:.:...: . . .. . . ::... .::: ::: NP_004 KQLKSNINIRFGIILREDIKELFLDLALMSQGSSVLNFSYPICEAALPKFSFCGRRKGEQ 60 70 80 90 100 110 120 130 140 150 160 pF1KE1 VNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN . . . . . .:.:. ..: NP_004 IYYAGPVNNPEFTIPQGEYQVLLELYTEKRSTVACANATIMCS 120 130 140 150 160 >>XP_016866994 (OMIM: 605241) PREDICTED: lymphocyte anti (189 aa) initn: 106 init1: 58 opt: 136 Z-score: 196.1 bits: 42.7 E(85289): 0.00035 Smith-Waterman score: 136; 25.3% identity (54.7% similar) in 150 aa overlap (5-149:8-150) 10 20 30 40 50 pF1KE1 MLPFLFFSTL-FSSIFTEAQKQYW----VCNSSDASISYTYCDKMQYPISINVNPCI ::. :: : : . . : ::..: . : :: .: ....:. : XP_016 MKGFTATLFLWTLIFPSCSGGGGGKAWPTHVVCSDSGLEVLYQSCDPLQ-DFGFSVEKCS 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 ELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFCRALKGET . :. ... : :.:.:.:...: . . .. . . ::... .::: :: XP_016 KQLKSNINIRFGIILREDIKELFLDLALMSQGSSVLNFSYPICEAALPKFSFCGRRKGGK 60 70 80 90 100 110 120 130 140 150 160 pF1KE1 VNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQPNSN .. .. : ... : . . :: . :: .:: XP_016 PSVLLT---AGRGLQRDKLELASEARTPRPE---LCLCPSPLDELILTYQHVLQKNNNKA 120 130 140 150 160 170 XP_016 HSIGLPYRAVVNIKMK 180 160 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:07:00 2016 done: Sun Nov 6 16:07:01 2016 Total Scan time: 3.570 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]