FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4039, 258 aa 1>>>pF1KE4039 258 - 258 aa - 258 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9971+/-0.000419; mu= 18.5736+/- 0.026 mean_var=141.9051+/-31.383, 0's: 0 Z-trim(114.0): 189 B-trim: 37 in 1/49 Lambda= 0.107665 statistics sampled from 23443 (23658) to 23443 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.277), width: 16 Scan time: 6.640 The best scores are: opt bits E(85289) NP_001153695 (OMIM: 608984,614649) E3 ubiquitin-pr ( 258) 1742 282.1 6.9e-76 XP_006716467 (OMIM: 608984,614649) PREDICTED: E3 u ( 258) 1742 282.1 6.9e-76 XP_011542968 (OMIM: 608984,614649) PREDICTED: E3 u ( 258) 1742 282.1 6.9e-76 NP_112216 (OMIM: 608984,614649) E3 ubiquitin-prote ( 258) 1742 282.1 6.9e-76 XP_016869370 (OMIM: 608984,614649) PREDICTED: E3 u ( 258) 1742 282.1 6.9e-76 NP_001153697 (OMIM: 608984,614649) E3 ubiquitin-pr ( 174) 1216 200.1 2.2e-51 XP_016869371 (OMIM: 608984,614649) PREDICTED: E3 u ( 174) 1216 200.1 2.2e-51 NP_001153696 (OMIM: 608984,614649) E3 ubiquitin-pr ( 200) 907 152.2 6.6e-37 XP_006716468 (OMIM: 608984,614649) PREDICTED: E3 u ( 208) 835 141.1 1.6e-33 >>NP_001153695 (OMIM: 608984,614649) E3 ubiquitin-protei (258 aa) initn: 1742 init1: 1742 opt: 1742 Z-score: 1483.5 bits: 282.1 E(85289): 6.9e-76 Smith-Waterman score: 1742; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258) 10 20 30 40 50 60 pF1KE4 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL 190 200 210 220 230 240 250 pF1KE4 LIYISIMYREVITQRLTR :::::::::::::::::: NP_001 LIYISIMYREVITQRLTR 250 >>XP_006716467 (OMIM: 608984,614649) PREDICTED: E3 ubiqu (258 aa) initn: 1742 init1: 1742 opt: 1742 Z-score: 1483.5 bits: 282.1 E(85289): 6.9e-76 Smith-Waterman score: 1742; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258) 10 20 30 40 50 60 pF1KE4 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL 190 200 210 220 230 240 250 pF1KE4 LIYISIMYREVITQRLTR :::::::::::::::::: XP_006 LIYISIMYREVITQRLTR 250 >>XP_011542968 (OMIM: 608984,614649) PREDICTED: E3 ubiqu (258 aa) initn: 1742 init1: 1742 opt: 1742 Z-score: 1483.5 bits: 282.1 E(85289): 6.9e-76 Smith-Waterman score: 1742; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258) 10 20 30 40 50 60 pF1KE4 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL 190 200 210 220 230 240 250 pF1KE4 LIYISIMYREVITQRLTR :::::::::::::::::: XP_011 LIYISIMYREVITQRLTR 250 >>NP_112216 (OMIM: 608984,614649) E3 ubiquitin-protein l (258 aa) initn: 1742 init1: 1742 opt: 1742 Z-score: 1483.5 bits: 282.1 E(85289): 6.9e-76 Smith-Waterman score: 1742; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258) 10 20 30 40 50 60 pF1KE4 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL 190 200 210 220 230 240 250 pF1KE4 LIYISIMYREVITQRLTR :::::::::::::::::: NP_112 LIYISIMYREVITQRLTR 250 >>XP_016869370 (OMIM: 608984,614649) PREDICTED: E3 ubiqu (258 aa) initn: 1742 init1: 1742 opt: 1742 Z-score: 1483.5 bits: 282.1 E(85289): 6.9e-76 Smith-Waterman score: 1742; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258) 10 20 30 40 50 60 pF1KE4 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL 190 200 210 220 230 240 250 pF1KE4 LIYISIMYREVITQRLTR :::::::::::::::::: XP_016 LIYISIMYREVITQRLTR 250 >>NP_001153697 (OMIM: 608984,614649) E3 ubiquitin-protei (174 aa) initn: 1216 init1: 1216 opt: 1216 Z-score: 1043.6 bits: 200.1 E(85289): 2.2e-51 Smith-Waterman score: 1216; 100.0% identity (100.0% similar) in 174 aa overlap (85-258:1-174) 60 70 80 90 100 110 pF1KE4 ENQELVRVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAY :::::::::::::::::::::::::::::: NP_001 MYCPICLHQASFPVETNCGHLFCGACIIAY 10 20 30 120 130 140 150 160 170 pF1KE4 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERI 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE4 MDLPTLLRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDLPTLLRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDF 100 110 120 130 140 150 240 250 pF1KE4 FVIFLLLIYISIMYREVITQRLTR :::::::::::::::::::::::: NP_001 FVIFLLLIYISIMYREVITQRLTR 160 170 >>XP_016869371 (OMIM: 608984,614649) PREDICTED: E3 ubiqu (174 aa) initn: 1216 init1: 1216 opt: 1216 Z-score: 1043.6 bits: 200.1 E(85289): 2.2e-51 Smith-Waterman score: 1216; 100.0% identity (100.0% similar) in 174 aa overlap (85-258:1-174) 60 70 80 90 100 110 pF1KE4 ENQELVRVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAY :::::::::::::::::::::::::::::: XP_016 MYCPICLHQASFPVETNCGHLFCGACIIAY 10 20 30 120 130 140 150 160 170 pF1KE4 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERI 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE4 MDLPTLLRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDLPTLLRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDF 100 110 120 130 140 150 240 250 pF1KE4 FVIFLLLIYISIMYREVITQRLTR :::::::::::::::::::::::: XP_016 FVIFLLLIYISIMYREVITQRLTR 160 170 >>NP_001153696 (OMIM: 608984,614649) E3 ubiquitin-protei (200 aa) initn: 907 init1: 907 opt: 907 Z-score: 783.6 bits: 152.2 E(85289): 6.6e-37 Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 pF1KE4 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL :::::::::::: NP_001 LGAISCPICRQTGSSEKSSRASEQTHQEAVACLDTQNSPACTVGCRSGPQHIPHDRMLPS 130 140 150 160 170 180 >>XP_006716468 (OMIM: 608984,614649) PREDICTED: E3 ubiqu (208 aa) initn: 1095 init1: 835 opt: 835 Z-score: 723.0 bits: 141.1 E(85289): 1.6e-33 Smith-Waterman score: 1006; 69.8% identity (74.8% similar) in 258 aa overlap (1-258:1-208) 10 20 30 40 50 60 pF1KE4 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV :::::::::::::::::::::::::::::::::::::::::::::: .: . : .. XP_006 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFR-MH--LLPLDSS-- 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW . . : . : .:: : : XP_006 ----------------------STLTCTV-------P----------SACTKPPSR---W 60 70 130 140 150 160 170 180 pF1KE4 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL ... . .:::::::::::::::::::::::::::::::::::::::::::::::: XP_006 RPTVDIFF---VVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL 80 90 100 110 120 130 190 200 210 220 230 240 pF1KE4 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL 140 150 160 170 180 190 250 pF1KE4 LIYISIMYREVITQRLTR :::::::::::::::::: XP_006 LIYISIMYREVITQRLTR 200 258 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:41:34 2016 done: Sun Nov 6 03:41:35 2016 Total Scan time: 6.640 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]