FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4039, 258 aa
  1>>>pF1KE4039 258 - 258 aa - 258 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7007+/-0.00105; mu= 14.2390+/- 0.062
 mean_var=124.0256+/-27.159, 0's: 0 Z-trim(107.4): 109  B-trim: 292 in 1/50
 Lambda= 0.115164
 statistics sampled from 9418 (9535) to 9418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.293), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS6138.1 RNF170 gene_id:81790|Hs108|chr8         ( 258) 1742 300.4 7.9e-82
CCDS55229.1 RNF170 gene_id:81790|Hs108|chr8        ( 174) 1216 212.8 1.2e-55
CCDS55230.1 RNF170 gene_id:81790|Hs108|chr8        ( 200)  907 161.6 3.9e-40


>>CCDS6138.1 RNF170 gene_id:81790|Hs108|chr8              (258 aa)
 initn: 1742 init1: 1742 opt: 1742  Z-score: 1582.6  bits: 300.4 E(32554): 7.9e-82
Smith-Waterman score: 1742; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KE4 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLL
              190       200       210       220       230       240

              250        
pF1KE4 LIYISIMYREVITQRLTR
       ::::::::::::::::::
CCDS61 LIYISIMYREVITQRLTR
              250        

>>CCDS55229.1 RNF170 gene_id:81790|Hs108|chr8             (174 aa)
 initn: 1216 init1: 1216 opt: 1216  Z-score: 1112.3  bits: 212.8 E(32554): 1.2e-55
Smith-Waterman score: 1216; 100.0% identity (100.0% similar) in 174 aa overlap (85-258:1-174)

           60        70        80        90       100       110    
pF1KE4 ENQELVRVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAY
                                     ::::::::::::::::::::::::::::::
CCDS55                               MYCPICLHQASFPVETNCGHLFCGACIIAY
                                             10        20        30

          120       130       140       150       160       170    
pF1KE4 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WRYGSWLGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERI
               40        50        60        70        80        90

          180       190       200       210       220       230    
pF1KE4 MDLPTLLRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDLPTLLRHAFREMFSVGGLFWMFRIRIILCLMGAFFYLISPLDFVPEALFGILGFLDDF
              100       110       120       130       140       150

          240       250        
pF1KE4 FVIFLLLIYISIMYREVITQRLTR
       ::::::::::::::::::::::::
CCDS55 FVIFLLLIYISIMYREVITQRLTR
              160       170    

>>CCDS55230.1 RNF170 gene_id:81790|Hs108|chr8             (200 aa)
 initn: 907 init1: 907 opt: 907  Z-score: 834.1  bits: 161.6 E(32554): 3.9e-40
Smith-Waterman score: 907; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)

               10        20        30        40        50        60
pF1KE4 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAKYQGEVQSLKLDDDSVIEGVSDQVLVAVVVSFALIATLVYALFRNVHQNIHPENQELV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RVLREQLQTEQDAPAATRQQFYTDMYCPICLHQASFPVETNCGHLFCGACIIAYWRYGSW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LGAISCPICRQTVTLLLTVFGEDDQSQDVLRLHQDINDYNRRFSGQPRSIMERIMDLPTL
       ::::::::::::                                                
CCDS55 LGAISCPICRQTGSSEKSSRASEQTHQEAVACLDTQNSPACTVGCRSGPQHIPHDRMLPS
              130       140       150       160       170       180




258 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:41:34 2016 done: Sun Nov  6 03:41:34 2016
 Total Scan time:  2.230 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]