FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4007, 155 aa 1>>>pF1KE4007 155 - 155 aa - 155 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5515+/-0.000756; mu= 11.9157+/- 0.045 mean_var=99.9811+/-21.133, 0's: 0 Z-trim(111.6): 97 B-trim: 473 in 1/51 Lambda= 0.128267 statistics sampled from 12388 (12511) to 12388 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.384), width: 16 Scan time: 1.740 The best scores are: opt bits E(32554) CCDS6091.1 RNF122 gene_id:79845|Hs108|chr8 ( 155) 1111 215.0 1.5e-56 CCDS13074.1 RNF24 gene_id:11237|Hs108|chr20 ( 148) 566 114.1 3.4e-26 CCDS46577.1 RNF24 gene_id:11237|Hs108|chr20 ( 169) 566 114.2 3.7e-26 >>CCDS6091.1 RNF122 gene_id:79845|Hs108|chr8 (155 aa) initn: 1111 init1: 1111 opt: 1111 Z-score: 1128.6 bits: 215.0 E(32554): 1.5e-56 Smith-Waterman score: 1111; 100.0% identity (100.0% similar) in 155 aa overlap (1-155:1-155) 10 20 30 40 50 60 pF1KE4 MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 SKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 SKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCL 70 80 90 100 110 120 130 140 150 pF1KE4 VKWLEVRCVCPMCNKPIASPSEATQNIGILLDELV ::::::::::::::::::::::::::::::::::: CCDS60 VKWLEVRCVCPMCNKPIASPSEATQNIGILLDELV 130 140 150 >>CCDS13074.1 RNF24 gene_id:11237|Hs108|chr20 (148 aa) initn: 571 init1: 296 opt: 566 Z-score: 583.8 bits: 114.1 E(32554): 3.4e-26 Smith-Waterman score: 566; 67.3% identity (90.3% similar) in 113 aa overlap (25-137:12-122) 10 20 30 40 50 60 pF1KE4 MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFI :: :.::.::::::.:.:::.::::.:::.::::.: CCDS13 MSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLI 10 20 30 40 70 80 90 100 110 120 pF1KE4 SKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCL .::.::..: :.::.:.:: .:.:.:. . ::::::::: .::::. ::.:::::::: CCDS13 -RLRHQAHKEFYAYKQVILKEKVKELNLH-ELCAVCLEDFKPRDELGICPCKHAFHRKCL 50 60 70 80 90 100 130 140 150 pF1KE4 VKWLEVRCVCPMCNKPIASPSEATQNIGILLDELV .:::::: :::.:: :. CCDS13 IKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV 110 120 130 140 >>CCDS46577.1 RNF24 gene_id:11237|Hs108|chr20 (169 aa) initn: 571 init1: 296 opt: 566 Z-score: 583.1 bits: 114.2 E(32554): 3.7e-26 Smith-Waterman score: 566; 67.3% identity (90.3% similar) in 113 aa overlap (25-137:33-143) 10 20 30 40 50 pF1KE4 MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLI :: :.::.::::::.:.:::.::::.:::. CCDS46 NKSGESRYPALFPVLGGSSMSSDFPHYNFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 FCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHA ::::.: .::.::..: :.::.:.:: .:.:.:. . ::::::::: .::::. ::.:: CCDS46 FCCYLI-RLRHQAHKEFYAYKQVILKEKVKELNLH-ELCAVCLEDFKPRDELGICPCKHA 70 80 90 100 110 120 120 130 140 150 pF1KE4 FHRKCLVKWLEVRCVCPMCNKPIASPSEATQNIGILLDELV ::::::.:::::: :::.:: :. CCDS46 FHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSKQDRGPPQGPLPGAENIV 130 140 150 160 155 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:25:30 2016 done: Sun Nov 6 04:25:30 2016 Total Scan time: 1.740 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]