FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5337, 259 aa 1>>>pF1KE5337 259 - 259 aa - 259 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.0753+/-0.00112; mu= 0.3644+/- 0.068 mean_var=250.3174+/-50.408, 0's: 0 Z-trim(112.4): 19 B-trim: 182 in 2/49 Lambda= 0.081064 statistics sampled from 13113 (13128) to 13113 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.403), width: 16 Scan time: 2.240 The best scores are: opt bits E(32554) CCDS6037.1 TNFRSF10C gene_id:8794|Hs108|chr8 ( 259) 1754 217.4 8e-57 CCDS6038.1 TNFRSF10D gene_id:8793|Hs108|chr8 ( 386) 819 108.2 8.9e-24 CCDS6039.1 TNFRSF10A gene_id:8797|Hs108|chr8 ( 468) 644 87.8 1.5e-17 CCDS6035.1 TNFRSF10B gene_id:8795|Hs108|chr8 ( 440) 599 82.5 5.5e-16 CCDS6036.1 TNFRSF10B gene_id:8795|Hs108|chr8 ( 411) 523 73.6 2.5e-13 >>CCDS6037.1 TNFRSF10C gene_id:8794|Hs108|chr8 (259 aa) initn: 1754 init1: 1754 opt: 1754 Z-score: 1133.6 bits: 217.4 E(32554): 8e-57 Smith-Waterman score: 1754; 99.6% identity (99.6% similar) in 259 aa overlap (1-259:1-259) 10 20 30 40 50 60 pF1KE5 MARIPKTLKFVVVIVAVLLPVLAYSATTARQEEVPQQTVAPQQQRHSFKGEECPAGSHRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 MARIPKTLKFVVVIVAVLLPVLAYSATTARQEEVPQQTVAPQQQRHSFKGEECPAGSHRS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EHTGACNPCTEGVDYTNASNNEPSCFPCTVCKSDQKHKSSCTMTRDTVCQCKEGTFRNEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 EHTGACNPCTEGVDYTNASNNEPSCFPCTVCKSDQKHKSSCTMTRDTVCQCKEGTFRNEN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 SPEMCRKCSRCPSGEVQVSNCTSWDDIQCVEEFGANATVETPAAEETMNTSPGTPAPAAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 SPEMCRKCSRCPSGEVQVSNCTSWDDIQCVEEFGANATVETPAAEETMNTSPGTPAPAAE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 ETMNTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPASSHY :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: CCDS60 ETMNTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPAPAAEETMITSPGTPASSHY 190 200 210 220 230 240 250 pF1KE5 LSCTIVGIIVLIVLLIVFV ::::::::::::::::::: CCDS60 LSCTIVGIIVLIVLLIVFV 250 >>CCDS6038.1 TNFRSF10D gene_id:8793|Hs108|chr8 (386 aa) initn: 937 init1: 680 opt: 819 Z-score: 540.3 bits: 108.2 E(32554): 8.9e-24 Smith-Waterman score: 819; 71.2% identity (85.3% similar) in 170 aa overlap (5-173:35-204) 10 20 30 pF1KE5 MARIPKTLKFVVVIVAVLLPVLAYSATTARQEEV :: ::::: :::::::: . ::: ::.:: CCDS60 GQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPRQDEV 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 PQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCKSD :::::::::::.:.: :::::::::::.:::::::::::::: :::: :::. :::::: CCDS60 PQQTVAPQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSG 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE5 QKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKC-SRCPSGEVQVSNCTSWDDIQCVEEF : .::::: ::::::::..:.:...::::::: : . :: : :.::::: .::.: .: CCDS60 QTNKSSCTTTRDTVCQCEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNES 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE5 GANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEETM .:..: .:::::::..: : CCDS60 AASSTGKTPAAEETVTTILGMLASPYHYLIIIVVLVIILAVVVVGFSCRKKFISYLKGIC 190 200 210 220 230 240 >>CCDS6039.1 TNFRSF10A gene_id:8797|Hs108|chr8 (468 aa) initn: 616 init1: 490 opt: 644 Z-score: 428.6 bits: 87.8 E(32554): 1.5e-17 Smith-Waterman score: 644; 60.0% identity (80.0% similar) in 155 aa overlap (3-156:87-236) 10 20 30 pF1KE5 MARIPKTLKFVVVIVAVLLPVLAYSATTARQE :. ::.::::: .::: :. ::.: . . CCDS60 TSMGQHGPSARARAGRAPGPRPAREASPRLRVHKTFKFVVV--GVLLQVVPSSAATIKLH 60 70 80 90 100 110 40 50 60 70 80 90 pF1KE5 EVPQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCK . :... :: .:: :: :: ::::::: :::: ::::: ::::::: .:.:::.:: CCDS60 D---QSIGTQQWEHSPLGELCPPGSHRSEHPGACNRCTEGVGYTNASNNLFACLPCTACK 120 130 140 150 160 170 100 110 120 130 140 150 pF1KE5 SDQKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKCSR-CPSGEVQVSNCTSWDDIQCVE ::....: :: ::.:.:::: :::::.:: :::::::: :: : :.:..:: :.::.::. CCDS60 SDEEERSPCTTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPWSDIECVH 180 190 200 210 220 230 160 170 180 190 200 210 pF1KE5 EFGANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEE . ..: CCDS60 KESGNGHNIWVILVVTLVVPLLLVAVLIVCCCIGSGCGGDPKCMDRVCFWRLGLLRGPGA 240 250 260 270 280 290 >>CCDS6035.1 TNFRSF10B gene_id:8795|Hs108|chr8 (440 aa) initn: 685 init1: 403 opt: 599 Z-score: 400.5 bits: 82.5 E(32554): 5.5e-16 Smith-Waterman score: 599; 52.3% identity (72.7% similar) in 176 aa overlap (3-176:33-206) 10 20 30 pF1KE5 MARIPKTLKFVVVIVAVLLPVLAYSATTARQE :.:::: :.:..:::: : : :: ..:. CCDS60 QRGQNAPAASGARKRHGPGPREARGARPGPRVPKTL--VLVVAAVLLLVSAESALITQQD 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 EVPQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCK .::: .::::.: : . :: : : :: : : : ::.. :. :. :: : CCDS60 LAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCD 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE5 SDQKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKC-SRCPSGEVQVSNCTSWDDIQCV- : . . : :: ::.:::::.:::::.:.:::::::: . :: : :.:..:: :.::.:: CCDS60 SGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVH 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE5 EEFGANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAE .: :.. . :.::.:::...:::::: CCDS60 KESGTKHSGEVPAVEETVTSSPGTPASPCSLSGIIIGVTVAAVVLIVAVFVCKSLLWKKV 190 200 210 220 230 240 >>CCDS6036.1 TNFRSF10B gene_id:8795|Hs108|chr8 (411 aa) initn: 497 init1: 403 opt: 523 Z-score: 352.9 bits: 73.6 E(32554): 2.5e-13 Smith-Waterman score: 523; 38.2% identity (59.8% similar) in 246 aa overlap (3-242:33-275) 10 20 30 pF1KE5 MARIPKTLKFVVVIVAVLLPVLAYSATTARQE :.:::: :.:..:::: : : :: ..:. CCDS60 QRGQNAPAASGARKRHGPGPREARGARPGPRVPKTL--VLVVAAVLLLVSAESALITQQD 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 EVPQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCK .::: .::::.: : . :: : : :: : : : ::.. :. :. :: : CCDS60 LAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCD 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE5 SDQKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKC-SRCPSGEVQVSNCTSWDDIQCVE : . . : :: ::.:::::.:::::.:.:::::::: . :: : :.:..:: :.::.::. CCDS60 SGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVH 130 140 150 160 170 180 160 170 180 190 200 pF1KE5 EFGANATVETPAAEETMNTSPGTPAPAAEETMN-----TSPGTPAPAAEETMTTSPGTPA . .. : :: . . . .... : : : . . ::. CCDS60 KESGIIIGVTVAAVVLIVAVFVCKSLLWKKVLPYLKGICSGGGGDPERVDRSSQRPGAED 190 200 210 220 230 240 210 220 230 240 250 pF1KE5 PAAEETMTTSPGTPAPAAEETMTTSPGTPASSHYLSCTIVGIIVLIVLLIVFV . .: .. : .: .: . :. :.. ..:: CCDS60 NVLNEIVSILQPTQVPE-QEMEVQEPAEPTGVNMLSPGESEHLLEPAEAERSQRRRLLVP 250 260 270 280 290 CCDS60 ANEGDPTETLRQCFDDFADLVPFDSWEPLMRKLGLMDNEIKVAKAEAAGHRDTLYTMLIK 300 310 320 330 340 350 259 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:54:15 2016 done: Mon Nov 7 23:54:15 2016 Total Scan time: 2.240 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]