FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3001, 68 aa 1>>>pF1KE3001 68 - 68 aa - 68 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.2281+/-0.000523; mu= 12.3787+/- 0.031 mean_var=53.5068+/-10.320, 0's: 0 Z-trim(114.3): 10 B-trim: 64 in 2/49 Lambda= 0.175336 statistics sampled from 14883 (14893) to 14883 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.457), width: 16 Scan time: 1.360 The best scores are: opt bits E(32554) CCDS5959.1 DEFB1 gene_id:1672|Hs108|chr8 ( 68) 482 128.4 3.3e-31 >>CCDS5959.1 DEFB1 gene_id:1672|Hs108|chr8 (68 aa) initn: 482 init1: 482 opt: 482 Z-score: 673.7 bits: 128.4 E(32554): 3.3e-31 Smith-Waterman score: 482; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68) 10 20 30 40 50 60 pF1KE3 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY 10 20 30 40 50 60 pF1KE3 RGKAKCCK :::::::: CCDS59 RGKAKCCK 68 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:31:14 2016 done: Sun Nov 6 04:31:14 2016 Total Scan time: 1.360 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]