FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5757, 759 aa 1>>>pF1KE5757 759 - 759 aa - 759 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.7149+/-0.00121; mu= 3.0726+/- 0.074 mean_var=359.2406+/-73.115, 0's: 0 Z-trim(110.8): 57 B-trim: 0 in 0/55 Lambda= 0.067668 statistics sampled from 11882 (11911) to 11882 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.366), width: 16 Scan time: 4.590 The best scores are: opt bits E(32554) CCDS5801.1 RBM28 gene_id:55131|Hs108|chr7 ( 759) 4955 498.6 1.6e-140 CCDS55159.1 RBM28 gene_id:55131|Hs108|chr7 ( 618) 3790 384.7 2.3e-106 >>CCDS5801.1 RBM28 gene_id:55131|Hs108|chr7 (759 aa) initn: 4955 init1: 4955 opt: 4955 Z-score: 2636.5 bits: 498.6 E(32554): 1.6e-140 Smith-Waterman score: 4955; 100.0% identity (100.0% similar) in 759 aa overlap (1-759:1-759) 10 20 30 40 50 60 pF1KE5 MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 ALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 LSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 GRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEENDDDDDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 GRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEENDDDDDDD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 DEEDGVFDDEDEEEENIESKVTKPVQIQKRAVKRPAPAKSSDHSEEDSDLEESDSIDDGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 DEEDGVFDDEDEEEENIESKVTKPVQIQKRAVKRPAPAKSSDHSEEDSDLEESDSIDDGE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 ELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 LKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGRQLKVDLAVTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 LKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGRQLKVDLAVTR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 DEAAKLQTTKVKKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 DEAAKLQTTKVKKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKDQ 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 NIFVSRTRLCLHNLPKAVDDKQLRKLLLSATSGEKGVRIKECRVMRDLKGVHGNMKGQSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 NIFVSRTRLCLHNLPKAVDDKQLRKLLLSATSGEKGVRIKECRVMRDLKGVHGNMKGQSL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE5 GYAFAEFQEHEHALKALRLINNNPEIFGPLKRPIVEFSLEDRRKLKMKELRIQRSLQKMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 GYAFAEFQEHEHALKALRLINNNPEIFGPLKRPIVEFSLEDRRKLKMKELRIQRSLQKMR 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE5 SKPATGEPQKGQPEPAKDQQQKAAQHHTEEQSKVPPEQKRKAGSTSWTGFQTKAEVEQVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 SKPATGEPQKGQPEPAKDQQQKAAQHHTEEQSKVPPEQKRKAGSTSWTGFQTKAEVEQVE 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE5 LPDGKKRRKVLALPSHRGPKIRLRDKGKVKPVHPKKPKPQINQWKQEKQQLSSEQVSRKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 LPDGKKRRKVLALPSHRGPKIRLRDKGKVKPVHPKKPKPQINQWKQEKQQLSSEQVSRKK 670 680 690 700 710 720 730 740 750 pF1KE5 AKGNKTETRFNQLVEQYKQKLLGPSKGAPLAKRSKWFDS ::::::::::::::::::::::::::::::::::::::: CCDS58 AKGNKTETRFNQLVEQYKQKLLGPSKGAPLAKRSKWFDS 730 740 750 >>CCDS55159.1 RBM28 gene_id:55131|Hs108|chr7 (618 aa) initn: 3790 init1: 3790 opt: 3790 Z-score: 2022.9 bits: 384.7 E(32554): 2.3e-106 Smith-Waterman score: 3790; 100.0% identity (100.0% similar) in 580 aa overlap (180-759:39-618) 150 160 170 180 190 200 pF1KE5 DGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKS :::::::::::::::::::::::::::::: CCDS55 GRLPPSARSEQLEELFSQVGPVKQCFVVTEKGRTVAVDWAVAKDKYKDTQSVSAIGEEKS 10 20 30 40 50 60 210 220 230 240 250 260 pF1KE5 HESKHQESVKKKGREEEDMEEEENDDDDDDDDEEDGVFDDEDEEEENIESKVTKPVQIQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 HESKHQESVKKKGREEEDMEEEENDDDDDDDDEEDGVFDDEDEEEENIESKVTKPVQIQK 70 80 90 100 110 120 270 280 290 300 310 320 pF1KE5 RAVKRPAPAKSSDHSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 RAVKRPAPAKSSDHSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPS 130 140 150 160 170 180 330 340 350 360 370 380 pF1KE5 DVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 DVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAA 190 200 210 220 230 240 390 400 410 420 430 440 pF1KE5 QKCLLAASPENEAGGLKLDGRQLKVDLAVTRDEAAKLQTTKVKKPTGTRNLYLAREGLIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 QKCLLAASPENEAGGLKLDGRQLKVDLAVTRDEAAKLQTTKVKKPTGTRNLYLAREGLIR 250 260 270 280 290 300 450 460 470 480 490 500 pF1KE5 AGTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 AGTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLS 310 320 330 340 350 360 510 520 530 540 550 560 pF1KE5 ATSGEKGVRIKECRVMRDLKGVHGNMKGQSLGYAFAEFQEHEHALKALRLINNNPEIFGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 ATSGEKGVRIKECRVMRDLKGVHGNMKGQSLGYAFAEFQEHEHALKALRLINNNPEIFGP 370 380 390 400 410 420 570 580 590 600 610 620 pF1KE5 LKRPIVEFSLEDRRKLKMKELRIQRSLQKMRSKPATGEPQKGQPEPAKDQQQKAAQHHTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 LKRPIVEFSLEDRRKLKMKELRIQRSLQKMRSKPATGEPQKGQPEPAKDQQQKAAQHHTE 430 440 450 460 470 480 630 640 650 660 670 680 pF1KE5 EQSKVPPEQKRKAGSTSWTGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 EQSKVPPEQKRKAGSTSWTGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKV 490 500 510 520 530 540 690 700 710 720 730 740 pF1KE5 KPVHPKKPKPQINQWKQEKQQLSSEQVSRKKAKGNKTETRFNQLVEQYKQKLLGPSKGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 KPVHPKKPKPQINQWKQEKQQLSSEQVSRKKAKGNKTETRFNQLVEQYKQKLLGPSKGAP 550 560 570 580 590 600 750 pF1KE5 LAKRSKWFDS :::::::::: CCDS55 LAKRSKWFDS 610 759 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:30:33 2016 done: Tue Nov 8 04:30:33 2016 Total Scan time: 4.590 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]