FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3047, 185 aa 1>>>pF1KE3047 185 - 185 aa - 185 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0804+/-0.000773; mu= 14.6349+/- 0.047 mean_var=74.7543+/-15.424, 0's: 0 Z-trim(109.6): 94 B-trim: 742 in 2/49 Lambda= 0.148339 statistics sampled from 10870 (10990) to 10870 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.338), width: 16 Scan time: 1.980 The best scores are: opt bits E(32554) CCDS5719.1 IFT22 gene_id:64792|Hs108|chr7 ( 185) 1266 279.6 7.6e-76 CCDS47670.1 IFT22 gene_id:64792|Hs108|chr7 ( 155) 799 179.6 8.1e-46 CCDS47671.1 IFT22 gene_id:64792|Hs108|chr7 ( 108) 729 164.5 2e-41 >>CCDS5719.1 IFT22 gene_id:64792|Hs108|chr7 (185 aa) initn: 1266 init1: 1266 opt: 1266 Z-score: 1475.1 bits: 279.6 E(32554): 7.6e-76 Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185) 10 20 30 40 50 60 pF1KE3 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 130 140 150 160 170 180 pF1KE3 MSIMT ::::: CCDS57 MSIMT >>CCDS47670.1 IFT22 gene_id:64792|Hs108|chr7 (155 aa) initn: 799 init1: 799 opt: 799 Z-score: 936.0 bits: 179.6 E(32554): 8.1e-46 Smith-Waterman score: 974; 83.8% identity (83.8% similar) in 185 aa overlap (1-185:1-155) 10 20 30 40 50 60 pF1KE3 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE ::::::::::::::::::::::::::::::::::::::: CCDS47 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVR--------------------- 10 20 30 70 80 90 100 110 120 pF1KE3 LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 ---------FESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 100 110 120 130 140 150 pF1KE3 MSIMT ::::: CCDS47 MSIMT >>CCDS47671.1 IFT22 gene_id:64792|Hs108|chr7 (108 aa) initn: 729 init1: 729 opt: 729 Z-score: 857.2 bits: 164.5 E(32554): 2e-41 Smith-Waterman score: 729; 100.0% identity (100.0% similar) in 108 aa overlap (78-185:1-108) 50 60 70 80 90 100 pF1KE3 VTSNNKGTGCEFELWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFV :::::::::::::::::::::::::::::: CCDS47 MKDAHGVVIVFNADIPSHRKEMEMWYSCFV 10 20 30 110 120 130 140 150 160 pF1KE3 QQPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 QQPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKS 40 50 60 70 80 90 170 180 pF1KE3 IINSMSESRDREEMSIMT :::::::::::::::::: CCDS47 IINSMSESRDREEMSIMT 100 185 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:22:56 2016 done: Sun Nov 6 02:22:56 2016 Total Scan time: 1.980 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]