FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1791, 303 aa 1>>>pF1KE1791 303 - 303 aa - 303 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5229+/-0.000272; mu= 16.5623+/- 0.017 mean_var=88.7767+/-18.365, 0's: 0 Z-trim(120.3): 44 B-trim: 1797 in 1/54 Lambda= 0.136121 statistics sampled from 35270 (35321) to 35270 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.414), width: 16 Scan time: 8.670 The best scores are: opt bits E(85289) NP_038467 (OMIM: 605341) paired immunoglobulin-lik ( 303) 2018 405.4 7e-113 NP_839956 (OMIM: 605342) paired immunoglobulin-lik ( 227) 1215 247.6 1.7e-65 NP_840057 (OMIM: 605341) paired immunoglobulin-lik ( 175) 1051 215.3 6.8e-56 NP_840056 (OMIM: 605341) paired immunoglobulin-lik ( 230) 1035 212.3 7.4e-55 XP_011525740 (OMIM: 604200) PREDICTED: sialic acid ( 500) 158 40.3 0.0092 NP_003821 (OMIM: 604200) sialic acid-binding Ig-li ( 551) 158 40.4 0.0099 >>NP_038467 (OMIM: 605341) paired immunoglobulin-like ty (303 aa) initn: 2018 init1: 2018 opt: 2018 Z-score: 2147.6 bits: 405.4 E(85289): 7e-113 Smith-Waterman score: 2018; 99.7% identity (99.7% similar) in 303 aa overlap (1-303:1-303) 10 20 30 40 50 60 pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_038 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: NP_038 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_038 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_038 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_038 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV 250 260 270 280 290 300 pF1KE1 LKA ::: NP_038 LKA >>NP_839956 (OMIM: 605342) paired immunoglobulin-like ty (227 aa) initn: 1083 init1: 997 opt: 1215 Z-score: 1297.0 bits: 247.6 E(85289): 1.7e-65 Smith-Waterman score: 1215; 80.8% identity (90.4% similar) in 229 aa overlap (1-227:1-221) 10 20 30 40 50 60 pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE :::::::::: :: :::::::.:::::::::::::::::::::::::::::::::::::: NP_839 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ :: .:.:::::::::::::::::::::::::::::::::::::::.:::::::::.:.:: NP_839 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV :::::::::::: ::::: :::.::::.::::::::: ::: ::::: .:::: NP_839 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTT--------TWRPSSTTTIAGLRV 130 140 150 160 170 190 200 210 220 230 pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLR--WRRRKGQQRTKATTPAREP :..: .:.:::.::.::. ::.::.:: .::::.::: ::::::.. NP_839 TESKGHSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSRAPSSDF 180 190 200 210 220 240 250 260 270 280 290 pF1KE1 FQNTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLY >>NP_840057 (OMIM: 605341) paired immunoglobulin-like ty (175 aa) initn: 1051 init1: 1051 opt: 1051 Z-score: 1124.5 bits: 215.3 E(85289): 6.8e-56 Smith-Waterman score: 1051; 96.2% identity (97.5% similar) in 159 aa overlap (1-159:1-159) 10 20 30 40 50 60 pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_840 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: NP_840 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV :::::::::::::::::::::::::::::::. . ::: NP_840 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKTQRSHMRISGMKDKIQIPS 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ >>NP_840056 (OMIM: 605341) paired immunoglobulin-like ty (230 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 1105.9 bits: 212.3 E(85289): 7.4e-55 Smith-Waterman score: 1402; 75.6% identity (75.6% similar) in 303 aa overlap (1-303:1-230) 10 20 30 40 50 60 pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_840 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: NP_840 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV ::::::::::::::::::::::::::::::: NP_840 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQ----------------------------- 130 140 150 190 200 210 220 230 240 pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ :::::::::::::::: NP_840 --------------------------------------------GQQRTKATTPAREPFQ 160 250 260 270 280 290 300 pF1KE1 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_840 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV 170 180 190 200 210 220 pF1KE1 LKA ::: NP_840 LKA 230 >>XP_011525740 (OMIM: 604200) PREDICTED: sialic acid-bin (500 aa) initn: 117 init1: 58 opt: 158 Z-score: 170.6 bits: 40.3 E(85289): 0.0092 Smith-Waterman score: 158; 28.7% identity (53.5% similar) in 157 aa overlap (9-160:1-146) 10 20 30 40 50 60 pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE .::::: : : .:: : : : : .... : : .: :: :::. XP_011 MLPLLLLP--LLWGGSLQEKPVYELQVQ--KSVTVQEGLCVLVPCSFSYPWR 10 20 30 40 70 80 90 100 110 pF1KE1 -LATAPDVRISW-RRGH--FHGQSFYSTRPPS-IHKDYVNRLFLNWTEGQKSGFLRISNL ..: . . : : :. .... .. : .. . .:. : .:. : :.. XP_011 SWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDA 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 QKQDQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTT . .: . :: ::: ::. : . .::.. ::. ..: XP_011 RMEDTGSYFFRVE-----RGRDVKYSYQQNKLNLE--VTALIEKPDIHFLEPLESGRPTR 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 TGLRVTQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPA XP_011 LSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQ 170 180 190 200 210 220 >>NP_003821 (OMIM: 604200) sialic acid-binding Ig-like l (551 aa) initn: 117 init1: 58 opt: 158 Z-score: 170.0 bits: 40.4 E(85289): 0.0099 Smith-Waterman score: 158; 28.7% identity (53.5% similar) in 157 aa overlap (9-160:1-146) 10 20 30 40 50 60 pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE .::::: : : .:: : : : : .... : : .: :: :::. NP_003 MLPLLLLP--LLWGGSLQEKPVYELQVQ--KSVTVQEGLCVLVPCSFSYPWR 10 20 30 40 70 80 90 100 110 pF1KE1 -LATAPDVRISW-RRGH--FHGQSFYSTRPPS-IHKDYVNRLFLNWTEGQKSGFLRISNL ..: . . : : :. .... .. : .. . .:. : .:. : :.. NP_003 SWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDA 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 QKQDQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTT . .: . :: ::: ::. : . .::.. ::. ..: NP_003 RMEDTGSYFFRVE-----RGRDVKYSYQQNKLNLE--VTALIEKPDIHFLEPLESGRPTR 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 TGLRVTQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPA NP_003 LSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQ 170 180 190 200 210 220 303 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:21:53 2016 done: Sun Nov 6 16:21:55 2016 Total Scan time: 8.670 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]