FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1791, 303 aa 1>>>pF1KE1791 303 - 303 aa - 303 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7232+/-0.00066; mu= 15.0185+/- 0.040 mean_var=86.9380+/-17.238, 0's: 0 Z-trim(112.6): 35 B-trim: 0 in 0/51 Lambda= 0.137553 statistics sampled from 13338 (13368) to 13338 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.411), width: 16 Scan time: 2.870 The best scores are: opt bits E(32554) CCDS5691.1 PILRA gene_id:29992|Hs108|chr7 ( 303) 2018 409.6 1.5e-114 CCDS43622.1 PILRB gene_id:29990|Hs108|chr7 ( 227) 1215 250.2 1.1e-66 CCDS47660.1 PILRA gene_id:29992|Hs108|chr7 ( 175) 1051 217.5 5.7e-57 CCDS5692.1 PILRA gene_id:29992|Hs108|chr7 ( 230) 1035 214.4 6.3e-56 >>CCDS5691.1 PILRA gene_id:29992|Hs108|chr7 (303 aa) initn: 2018 init1: 2018 opt: 2018 Z-score: 2170.1 bits: 409.6 E(32554): 1.5e-114 Smith-Waterman score: 2018; 99.7% identity (99.7% similar) in 303 aa overlap (1-303:1-303) 10 20 30 40 50 60 pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: CCDS56 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV 250 260 270 280 290 300 pF1KE1 LKA ::: CCDS56 LKA >>CCDS43622.1 PILRB gene_id:29990|Hs108|chr7 (227 aa) initn: 1083 init1: 997 opt: 1215 Z-score: 1310.6 bits: 250.2 E(32554): 1.1e-66 Smith-Waterman score: 1215; 80.8% identity (90.4% similar) in 229 aa overlap (1-227:1-221) 10 20 30 40 50 60 pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE :::::::::: :: :::::::.:::::::::::::::::::::::::::::::::::::: CCDS43 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ :: .:.:::::::::::::::::::::::::::::::::::::::.:::::::::.:.:: CCDS43 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV :::::::::::: ::::: :::.::::.::::::::: ::: ::::: .:::: CCDS43 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTT--------TWRPSSTTTIAGLRV 130 140 150 160 170 190 200 210 220 230 pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLR--WRRRKGQQRTKATTPAREP :..: .:.:::.::.::. ::.::.:: .::::.::: ::::::.. CCDS43 TESKGHSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSRAPSSDF 180 190 200 210 220 240 250 260 270 280 290 pF1KE1 FQNTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLY >>CCDS47660.1 PILRA gene_id:29992|Hs108|chr7 (175 aa) initn: 1051 init1: 1051 opt: 1051 Z-score: 1136.3 bits: 217.5 E(32554): 5.7e-57 Smith-Waterman score: 1051; 96.2% identity (97.5% similar) in 159 aa overlap (1-159:1-159) 10 20 30 40 50 60 pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: CCDS47 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV :::::::::::::::::::::::::::::::. . ::: CCDS47 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKTQRSHMRISGMKDKIQIPS 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ >>CCDS5692.1 PILRA gene_id:29992|Hs108|chr7 (230 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 1117.5 bits: 214.4 E(32554): 6.3e-56 Smith-Waterman score: 1402; 75.6% identity (75.6% similar) in 303 aa overlap (1-303:1-230) 10 20 30 40 50 60 pF1KE1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LATAPDVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: CCDS56 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV ::::::::::::::::::::::::::::::: CCDS56 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQ----------------------------- 130 140 150 190 200 210 220 230 240 pF1KE1 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ :::::::::::::::: CCDS56 --------------------------------------------GQQRTKATTPAREPFQ 160 250 260 270 280 290 300 pF1KE1 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV 170 180 190 200 210 220 pF1KE1 LKA ::: CCDS56 LKA 230 303 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:21:53 2016 done: Sun Nov 6 16:21:53 2016 Total Scan time: 2.870 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]