FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1737, 243 aa 1>>>pF1KE1737 243 - 243 aa - 243 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9037+/-0.000268; mu= 12.5456+/- 0.017 mean_var=93.1677+/-18.476, 0's: 0 Z-trim(121.0): 7 B-trim: 0 in 0/60 Lambda= 0.132875 statistics sampled from 36877 (36884) to 36877 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.432), width: 16 Scan time: 7.340 The best scores are: opt bits E(85289) NP_054865 (OMIM: 605719) linker for activation of ( 243) 1649 325.4 5.7e-89 NP_115852 (OMIM: 605719) linker for activation of ( 243) 1649 325.4 5.7e-89 XP_011514860 (OMIM: 605719) PREDICTED: linker for ( 243) 1649 325.4 5.7e-89 NP_115853 (OMIM: 605719) linker for activation of ( 243) 1649 325.4 5.7e-89 >>NP_054865 (OMIM: 605719) linker for activation of T-ce (243 aa) initn: 1649 init1: 1649 opt: 1649 Z-score: 1718.3 bits: 325.4 E(85289): 5.7e-89 Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243) 10 20 30 40 50 60 pF1KE1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA 190 200 210 220 230 240 pF1KE1 TEA ::: NP_054 TEA >>NP_115852 (OMIM: 605719) linker for activation of T-ce (243 aa) initn: 1649 init1: 1649 opt: 1649 Z-score: 1718.3 bits: 325.4 E(85289): 5.7e-89 Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243) 10 20 30 40 50 60 pF1KE1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA 190 200 210 220 230 240 pF1KE1 TEA ::: NP_115 TEA >>XP_011514860 (OMIM: 605719) PREDICTED: linker for acti (243 aa) initn: 1649 init1: 1649 opt: 1649 Z-score: 1718.3 bits: 325.4 E(85289): 5.7e-89 Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243) 10 20 30 40 50 60 pF1KE1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA 190 200 210 220 230 240 pF1KE1 TEA ::: XP_011 TEA >>NP_115853 (OMIM: 605719) linker for activation of T-ce (243 aa) initn: 1649 init1: 1649 opt: 1649 Z-score: 1718.3 bits: 325.4 E(85289): 5.7e-89 Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243) 10 20 30 40 50 60 pF1KE1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA 190 200 210 220 230 240 pF1KE1 TEA ::: NP_115 TEA 243 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:23:30 2016 done: Sun Nov 6 16:23:31 2016 Total Scan time: 7.340 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]