FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1737, 243 aa 1>>>pF1KE1737 243 - 243 aa - 243 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4782+/-0.000623; mu= 15.0394+/- 0.038 mean_var=87.4896+/-16.977, 0's: 0 Z-trim(113.6): 8 B-trim: 0 in 0/54 Lambda= 0.137118 statistics sampled from 14237 (14240) to 14237 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.437), width: 16 Scan time: 2.620 The best scores are: opt bits E(32554) CCDS5566.2 LAT2 gene_id:7462|Hs108|chr7 ( 243) 1649 335.2 2.5e-92 >>CCDS5566.2 LAT2 gene_id:7462|Hs108|chr7 (243 aa) initn: 1649 init1: 1649 opt: 1649 Z-score: 1771.2 bits: 335.2 E(32554): 2.5e-92 Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243) 10 20 30 40 50 60 pF1KE1 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MSSGTELLWPGAALLVLLGVAASLCVRCSRPGAKRSEKIYQQRSLREDQQSFTGSRTYSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VGQAWPGPLADMAPTRKDKLLQFYPSLEDPASSRYQNFSKGSRHGSEEAYIDPIAMEYYN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 WGRFSKPPEDDDANSYENVLICKQKTTETGAQQEGIGGLCRGDLSLSLALKTGPTSGLCP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 SASPEEDEESEDYQNSASIHQWRESRKVMGQLQREASPGPVGSPDEEDGEPDYVNGEVAA 190 200 210 220 230 240 pF1KE1 TEA ::: CCDS55 TEA 243 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:23:30 2016 done: Sun Nov 6 16:23:30 2016 Total Scan time: 2.620 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]