FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1774, 281 aa
  1>>>pF1KE1774 281 - 281 aa - 281 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3482+/-0.000725; mu= 14.8361+/- 0.043
 mean_var=63.7366+/-13.033, 0's: 0 Z-trim(108.6): 15  B-trim: 591 in 1/49
 Lambda= 0.160650
 statistics sampled from 10301 (10310) to 10301 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.317), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS5557.1 WBSCR22 gene_id:114049|Hs108|chr7       ( 281) 1913 451.7 2.7e-127
CCDS56490.1 WBSCR22 gene_id:114049|Hs108|chr7      ( 298) 1607 380.8 6.4e-106


>>CCDS5557.1 WBSCR22 gene_id:114049|Hs108|chr7            (281 aa)
 initn: 1913 init1: 1913 opt: 1913  Z-score: 2398.8  bits: 451.7 E(32554): 2.7e-127
Smith-Waterman score: 1913; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KE1 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNERFPLRMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNERFPLRMS
              190       200       210       220       230       240

              250       260       270       280 
pF1KE1 RRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF
       :::::::::::::::::::::::::::::::::::::::::
CCDS55 RRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF
              250       260       270       280 

>>CCDS56490.1 WBSCR22 gene_id:114049|Hs108|chr7           (298 aa)
 initn: 1597 init1: 1597 opt: 1607  Z-score: 2015.1  bits: 380.8 E(32554): 6.4e-106
Smith-Waterman score: 1869; 94.3% identity (94.3% similar) in 298 aa overlap (1-281:1-298)

               10        20        30        40        50        60
pF1KE1 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MASRGRRPEHGGPPELFYDETEARKYVRNSRMIDIQTRMAGRALELLYLPENKPCYLLDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GCGTGLSGSYLSDEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGTFDGCI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELITTQATK
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KE1 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNER------
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
CCDS56 AGFSGGMVVDYPNSAKAKKFYLCLFSGPSTFIPEGLSENQDEVEPRESVFTNEREGGAFE
              190       200       210       220       230       240

                     240       250       260       270       280 
pF1KE1 -----------FPLRMSRRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF
                  :::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RRGIRGHQTRRFPLRMSRRGMVRKSRAWVLEKKERHRRQGREVRPDTQYTGRKRKPRF
              250       260       270       280       290        




281 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:24:03 2016 done: Sun Nov  6 16:24:03 2016
 Total Scan time:  2.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]