FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5241, 250 aa 1>>>pF1KE5241 250 - 250 aa - 250 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2309+/-0.000433; mu= 10.3251+/- 0.027 mean_var=82.6630+/-16.317, 0's: 0 Z-trim(111.6): 19 B-trim: 1000 in 1/50 Lambda= 0.141065 statistics sampled from 20289 (20294) to 20289 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.238), width: 16 Scan time: 5.130 The best scores are: opt bits E(85289) NP_057122 (OMIM: 260400,607444,609135) ribosome ma ( 250) 1603 336.0 3.9e-92 >>NP_057122 (OMIM: 260400,607444,609135) ribosome matura (250 aa) initn: 1603 init1: 1603 opt: 1603 Z-score: 1775.1 bits: 336.0 E(85289): 3.9e-92 Smith-Waterman score: 1603; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250) 10 20 30 40 50 60 pF1KE5 MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 SKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 NPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK 190 200 210 220 230 240 250 pF1KE5 DVEEGDEKFE :::::::::: NP_057 DVEEGDEKFE 250 250 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:38:15 2016 done: Tue Nov 8 07:38:16 2016 Total Scan time: 5.130 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]