FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5241, 250 aa
  1>>>pF1KE5241 250 - 250 aa - 250 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1214+/-0.00105; mu= 10.7752+/- 0.063
 mean_var=77.9267+/-15.053, 0's: 0 Z-trim(104.3): 18  B-trim: 0 in 0/50
 Lambda= 0.145288
 statistics sampled from 7846 (7849) to 7846 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.241), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS5537.1 SBDS gene_id:51119|Hs108|chr7           ( 250) 1603 345.5   2e-95


>>CCDS5537.1 SBDS gene_id:51119|Hs108|chr7                (250 aa)
 initn: 1603 init1: 1603 opt: 1603  Z-score: 1826.5  bits: 345.5 E(32554): 2e-95
Smith-Waterman score: 1603; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250)

               10        20        30        40        50        60
pF1KE5 MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 NPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK
              190       200       210       220       230       240

              250
pF1KE5 DVEEGDEKFE
       ::::::::::
CCDS55 DVEEGDEKFE
              250




250 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:38:15 2016 done: Tue Nov  8 07:38:15 2016
 Total Scan time:  1.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]