FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6624, 225 aa
  1>>>pF1KE6624 225 - 225 aa - 225 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4693+/-0.000777; mu= 12.8711+/- 0.047
 mean_var=62.8638+/-12.347, 0's: 0 Z-trim(107.6): 22  B-trim: 64 in 1/49
 Lambda= 0.161761
 statistics sampled from 9682 (9689) to 9682 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.298), width:  16
 Scan time:  1.190

The best scores are:                                      opt bits E(32554)
CCDS5522.1 PSPH gene_id:5723|Hs108|chr7            ( 225) 1468 350.9 3.9e-97


>>CCDS5522.1 PSPH gene_id:5723|Hs108|chr7                 (225 aa)
 initn: 1468 init1: 1468 opt: 1468  Z-score: 1857.4  bits: 350.9 E(32554): 3.9e-97
Smith-Waterman score: 1468; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KE6 MVSHSELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVSHSELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFKKIIMIGDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFKKIIMIGDG
              130       140       150       160       170       180

              190       200       210       220     
pF1KE6 ATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITDFVELLGELEE
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITDFVELLGELEE
              190       200       210       220     




225 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:53:23 2016 done: Tue Nov  8 14:53:23 2016
 Total Scan time:  1.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]