FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1759, 263 aa
  1>>>pF1KE1759 263 - 263 aa - 263 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9437+/-0.000654; mu= 16.6766+/- 0.039
 mean_var=62.7897+/-12.324, 0's: 0 Z-trim(110.0): 7  B-trim: 12 in 1/49
 Lambda= 0.161856
 statistics sampled from 11261 (11266) to 11261 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.346), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS5430.1 INMT gene_id:11185|Hs108|chr7           ( 263) 1778 423.3 8.5e-119
CCDS56479.1 INMT gene_id:11185|Hs108|chr7          ( 262) 1758 418.6 2.2e-117
CCDS8368.1 NNMT gene_id:4837|Hs108|chr11           ( 264)  887 215.2 3.6e-56
CCDS11343.1 PNMT gene_id:5409|Hs108|chr17          ( 282)  590 145.9 2.9e-35


>>CCDS5430.1 INMT gene_id:11185|Hs108|chr7                (263 aa)
 initn: 1778 init1: 1778 opt: 1778  Z-score: 2246.3  bits: 423.3 E(32554): 8.5e-119
Smith-Waterman score: 1778; 99.2% identity (99.2% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KE1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS54 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQLLHSPQ
              190       200       210       220       230       240

              250       260   
pF1KE1 SYSVTNAANNGVCCIVARKKPGP
       ::::::::::::: :::::::::
CCDS54 SYSVTNAANNGVCFIVARKKPGP
              250       260   

>>CCDS56479.1 INMT gene_id:11185|Hs108|chr7               (262 aa)
 initn: 1405 init1: 1405 opt: 1758  Z-score: 2221.1  bits: 418.6 E(32554): 2.2e-117
Smith-Waterman score: 1758; 98.9% identity (98.9% similar) in 263 aa overlap (1-263:1-262)

               10        20        30        40        50        60
pF1KE1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS56 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPG-LQGDTLI
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE1 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE1 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KE1 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS56 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQLLHSPQ
     180       190       200       210       220       230         

              250       260   
pF1KE1 SYSVTNAANNGVCCIVARKKPGP
       ::::::::::::: :::::::::
CCDS56 SYSVTNAANNGVCFIVARKKPGP
     240       250       260  

>>CCDS8368.1 NNMT gene_id:4837|Hs108|chr11                (264 aa)
 initn: 884 init1: 884 opt: 887  Z-score: 1121.8  bits: 215.2 E(32554): 3.6e-56
Smith-Waterman score: 887; 52.9% identity (74.1% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KE1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI
       :..:::. : : .:: :::::  ::.: .  : :...::  :. : : :   :..:: ::
CCDS83 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN
       ::::::::::.:.::.::..:...:..:.: .:::::::::: :.::.:.: ..:.::::
CCDS83 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL
         .  ::::::: :::.::::::  ..::. . :: :::::. : .. :: .: .:  ::
CCDS83 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ
        ::.::::::: ::   .:.   ::.:...:: . : .  :: :: .::. :: .    :
CCDS83 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ
              190       200       210       220       230       240

              250       260    
pF1KE1 SYSVTNAANNGVCCIVARKKPGP 
       ::: : : :.:.  .::::   : 
CCDS83 SYSSTMANNEGLFSLVARKLSRPL
              250       260    

>>CCDS11343.1 PNMT gene_id:5409|Hs108|chr17               (282 aa)
 initn: 576 init1: 429 opt: 590  Z-score: 746.6  bits: 145.9 E(32554): 2.9e-35
Smith-Waterman score: 590; 41.0% identity (72.5% similar) in 229 aa overlap (11-235:27-253)

                               10        20         30        40   
pF1KE1                 MKGGFTGGDEYQKHFLPRDYLATYYSFD-GSPSPEAEMLKFNLE
                                 ::. : :: :: . :.   :.      .  ..:.
CCDS11 MSGADRSPNAGAAPDSAPGQAAVASAYQR-FEPRAYLRNNYAPPRGDLCNPNGVGPWKLR
               10        20         30        40        50         

            50        60        70        80        90       100   
pF1KE1 CLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPG
       :: .::. : ..: ::::::::::.::.:.::. :.:::..:: . ::.:: .::..:::
CCDS11 CLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPG
      60        70        80        90       100       110         

           110       120       130       140          150       160
pF1KE1 AYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPL---APAVLPLADCV
       :..:.   . :: .::..  :..::..::: :::::  :::  .::   .:: :: :: .
CCDS11 AFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLP-ADAL
     120       130       140       150       160       170         

              170       180       190       200       210       220
pF1KE1 LTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGE
       .. . .: .  .: ... :: ....::.:::::.   .:.   :..:. ... : . . :
CCDS11 VSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEE
      180       190       200       210       220       230        

              230       240       250       260    
pF1KE1 VEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKPGP 
       :..:.. .:. ...:                             
CCDS11 VREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL
      240       250       260       270       280  




263 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:25:15 2016 done: Sun Nov  6 16:25:15 2016
 Total Scan time:  2.510 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]