FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4032, 242 aa 1>>>pF1KE4032 242 - 242 aa - 242 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.6209+/-0.000859; mu= 3.8805+/- 0.052 mean_var=306.0840+/-63.859, 0's: 0 Z-trim(116.7): 18 B-trim: 0 in 0/53 Lambda= 0.073308 statistics sampled from 17321 (17331) to 17321 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.532), width: 16 Scan time: 2.800 The best scores are: opt bits E(32554) CCDS5426.1 ZNRF2 gene_id:223082|Hs108|chr7 ( 242) 1678 189.6 1.6e-48 CCDS10912.1 ZNRF1 gene_id:84937|Hs108|chr16 ( 227) 609 76.5 1.6e-14 >>CCDS5426.1 ZNRF2 gene_id:223082|Hs108|chr7 (242 aa) initn: 1678 init1: 1678 opt: 1678 Z-score: 984.8 bits: 189.6 E(32554): 1.6e-48 Smith-Waterman score: 1678; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242) 10 20 30 40 50 60 pF1KE4 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 ASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGGFKCPVCSKFVSSDEMDLHLVMCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 PEDGGGGRDRPVGGSPGGPRLVIGSLPAHLSPHMFGGFKCPVCSKFVSSDEMDLHLVMCL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 TKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCPEHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCPEHP 190 200 210 220 230 240 pF1KE4 SD :: CCDS54 SD >>CCDS10912.1 ZNRF1 gene_id:84937|Hs108|chr16 (227 aa) initn: 671 init1: 553 opt: 609 Z-score: 374.1 bits: 76.5 E(32554): 1.6e-14 Smith-Waterman score: 664; 45.6% identity (65.3% similar) in 248 aa overlap (1-242:1-227) 10 20 30 40 50 pF1KE4 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGAN--GTAGGGGGARAAAAGRFPAQVPSAHQ ::.::: : . : . : .: ::: : :::: . . . . . . CCDS10 MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 PSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVH ::..::. : . .: ::. : . . ..:. :..: .. : : :.. CCDS10 PSTAGGV------PFGLYTPASRGTGDSERAPGGGGSASDSTYAHGN------GYQET-- 70 80 90 100 120 130 140 150 160 170 pF1KE4 SSPEDGGGGRDRPVGGSPGGPRLVIG-SLPAHLSPHMFG---GFKCPVCSKFVSSDEMDL :::. : : : : .. .:: :..:. :. :::::.::: :.::::.. CCDS10 ------GGGHHRD-GMLYLGSRASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEM 110 120 130 140 150 180 190 200 210 220 230 pF1KE4 HLVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNR :..:::.:::..::.:::.::::::.:::::: ::::::::::::::::.::: :::::: CCDS10 HFIMCLSKPRLSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNR 160 170 180 190 200 210 240 pF1KE4 SCPEHPSD ::::::.: CCDS10 SCPEHPAD 220 242 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:20:52 2016 done: Mon Nov 7 16:20:52 2016 Total Scan time: 2.800 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]