FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3414, 353 aa 1>>>pF1KE3414 353 - 353 aa - 353 aa Library: /omim/omim.rfq.tfa 63334102 residues in 89105 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.9265+/-0.000527; mu= 7.8556+/- 0.033 mean_var=514.4885+/-111.368, 0's: 0 Z-trim(119.1): 202 B-trim: 2007 in 1/54 Lambda= 0.056544 statistics sampled from 33345 (33581) to 33345 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.377), width: 16 Scan time: 8.980 The best scores are: opt bits E(89105) NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353) 2488 217.7 3.3e-56 XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353) 2488 217.7 3.3e-56 XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341) 2404 210.8 3.7e-54 XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341) 2404 210.8 3.7e-54 NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341) 2404 210.8 3.7e-54 NP_001317177 (OMIM: 605372) heterogeneous nuclear ( 356) 1450 133.0 1e-30 NP_001317176 (OMIM: 605372) heterogeneous nuclear ( 356) 1450 133.0 1e-30 NP_001317178 (OMIM: 605372) heterogeneous nuclear ( 378) 1450 133.1 1e-30 NP_919223 (OMIM: 605372) heterogeneous nuclear rib ( 378) 1450 133.1 1e-30 NP_112420 (OMIM: 164017,615424,615426) heterogeneo ( 372) 1439 132.2 1.9e-30 XP_005268883 (OMIM: 164017,615424,615426) PREDICTE ( 372) 1439 132.2 1.9e-30 NP_002127 (OMIM: 164017,615424,615426) heterogeneo ( 320) 1276 118.7 1.8e-26 NP_001317179 (OMIM: 605372) heterogeneous nuclear ( 331) 1245 116.2 1.1e-25 NP_001317180 (OMIM: 605372) heterogeneous nuclear ( 331) 1245 116.2 1.1e-25 XP_016874740 (OMIM: 164017,615424,615426) PREDICTE ( 295) 1239 115.7 1.4e-25 NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305) 939 91.2 3.3e-18 NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332) 685 70.6 6e-12 NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336) 679 70.1 8.4e-12 NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355) 675 69.8 1.1e-11 NP_112740 (OMIM: 607137,609115) heterogeneous nucl ( 420) 669 69.4 1.6e-11 NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285) 597 63.3 8.1e-10 XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding ( 332) 592 63.0 1.1e-09 NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328) 591 62.9 1.2e-09 XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 585 62.4 1.7e-09 XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 585 62.4 1.7e-09 NP_001003810 (OMIM: 601324) heterogeneous nuclear ( 287) 580 61.9 2.1e-09 XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding ( 343) 580 62.0 2.3e-09 NP_001309179 (OMIM: 607897) RNA-binding protein Mu ( 324) 579 61.9 2.4e-09 NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306) 576 61.6 2.7e-09 XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding ( 351) 558 60.2 8.1e-09 NP_002433 (OMIM: 603328) RNA-binding protein Musas ( 362) 558 60.3 8.2e-09 XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding ( 362) 558 60.3 8.2e-09 XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding ( 295) 547 59.2 1.4e-08 NP_001193929 (OMIM: 607137,609115) heterogeneous n ( 363) 543 59.1 1.9e-08 NP_733839 (OMIM: 607897) RNA-binding protein Musas ( 251) 539 58.4 2e-08 NP_001309180 (OMIM: 607897) RNA-binding protein Mu ( 255) 539 58.4 2e-08 XP_016880670 (OMIM: 601574,612237) PREDICTED: TATA ( 323) 408 47.9 3.7e-05 XP_011523617 (OMIM: 601574,612237) PREDICTED: TATA ( 501) 408 48.3 4.6e-05 NP_003478 (OMIM: 601574,612237) TATA-binding prote ( 589) 408 48.4 4.9e-05 NP_631961 (OMIM: 601574,612237) TATA-binding prote ( 592) 408 48.4 4.9e-05 XP_016856353 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05 XP_016856356 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05 XP_016856354 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05 NP_031401 (OMIM: 605078,612069) TAR DNA-binding pr ( 414) 404 47.8 5.3e-05 XP_016856352 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05 XP_016856357 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05 XP_016856355 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05 NP_775882 (OMIM: 616142) protein FAM98B [Homo sapi ( 433) 366 44.8 0.00046 NP_000217 (OMIM: 144200,607606) keratin, type I cy ( 623) 342 43.1 0.0021 NP_000418 (OMIM: 152445,604117) loricrin [Homo sap ( 312) 318 40.6 0.006 >>NP_112533 (OMIM: 600124,615422) heterogeneous nuclear (353 aa) initn: 2488 init1: 2488 opt: 2488 Z-score: 1130.5 bits: 217.7 E(89105): 3.3e-56 Smith-Waterman score: 2488; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353) 10 20 30 40 50 60 pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 310 320 330 340 350 >>XP_005249786 (OMIM: 600124,615422) PREDICTED: heteroge (353 aa) initn: 2488 init1: 2488 opt: 2488 Z-score: 1130.5 bits: 217.7 E(89105): 3.3e-56 Smith-Waterman score: 2488; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353) 10 20 30 40 50 60 pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 310 320 330 340 350 >>XP_016867598 (OMIM: 600124,615422) PREDICTED: heteroge (341 aa) initn: 2404 init1: 2404 opt: 2404 Z-score: 1093.6 bits: 210.8 E(89105): 3.7e-54 Smith-Waterman score: 2404; 99.7% identity (100.0% similar) in 340 aa overlap (14-353:2-341) 10 20 30 40 50 60 pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR .:::::::::::::::::::::::::::::::::::::::::::::: XP_016 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 10 20 30 40 70 80 90 100 110 120 pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE3 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 230 240 250 260 270 280 310 320 330 340 350 pF1KE3 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 290 300 310 320 330 340 >>XP_016867599 (OMIM: 600124,615422) PREDICTED: heteroge (341 aa) initn: 2404 init1: 2404 opt: 2404 Z-score: 1093.6 bits: 210.8 E(89105): 3.7e-54 Smith-Waterman score: 2404; 99.7% identity (100.0% similar) in 340 aa overlap (14-353:2-341) 10 20 30 40 50 60 pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR .:::::::::::::::::::::::::::::::::::::::::::::: XP_016 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 10 20 30 40 70 80 90 100 110 120 pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE3 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 230 240 250 260 270 280 310 320 330 340 350 pF1KE3 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 290 300 310 320 330 340 >>NP_002128 (OMIM: 600124,615422) heterogeneous nuclear (341 aa) initn: 2404 init1: 2404 opt: 2404 Z-score: 1093.6 bits: 210.8 E(89105): 3.7e-54 Smith-Waterman score: 2404; 99.7% identity (100.0% similar) in 340 aa overlap (14-353:2-341) 10 20 30 40 50 60 pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR .:::::::::::::::::::::::::::::::::::::::::::::: NP_002 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 10 20 30 40 70 80 90 100 110 120 pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE3 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY 230 240 250 260 270 280 310 320 330 340 350 pF1KE3 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY 290 300 310 320 330 340 >>NP_001317177 (OMIM: 605372) heterogeneous nuclear ribo (356 aa) initn: 1420 init1: 1154 opt: 1450 Z-score: 672.9 bits: 133.0 E(89105): 1e-30 Smith-Waterman score: 1634; 71.1% identity (84.3% similar) in 356 aa overlap (15-350:7-354) 10 20 30 40 50 60 pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR .: ::.:::::::::::::..:::...:.:: :::::::::: .:: NP_001 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK ::::::::.: . :::::: ::::..:::::::::::.::.: :::::.::::.:::::: NP_001 SRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIK 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH :::::..::::::.::::.:::.. ::::::::::.:::::::: :::::.::::::::: NP_001 EDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGH 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFG-F----GDSRGGGGNFGPGPGSNFRGGSDGYG : ::.::::.:::: . :.: ::::. : : :. ::::::: : . . ::: : : NP_001 NCEVKKALSKQEMQSAGSQR-GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGG 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 SGR----GFGDG-YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG--YD .: : ::: :::.:: :::.::.:::.. ::::::::::::::::::::: :: NP_001 GGSRGSYGGGDGGYNGFGGD--GGNYGGGPGYSS-RGGYGGGGPGYGNQGGGYGGGGGYD 240 250 260 270 280 290 300 310 320 330 340 pF1KE3 ------NYGGGNYGSG-NYNDFGNYN-QQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG :.::::::.: ::::::::. :: :::::::.:.::: :. :.::::: :: : NP_001 GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG-RSSGSPYGGG-YGSG- 290 300 310 320 330 340 350 pF1KE3 SGGSGGYGGRSRY :::::::.: NP_001 -GGSGGYGSRRF 350 >>NP_001317176 (OMIM: 605372) heterogeneous nuclear ribo (356 aa) initn: 1420 init1: 1154 opt: 1450 Z-score: 672.9 bits: 133.0 E(89105): 1e-30 Smith-Waterman score: 1634; 71.1% identity (84.3% similar) in 356 aa overlap (15-350:7-354) 10 20 30 40 50 60 pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR .: ::.:::::::::::::..:::...:.:: :::::::::: .:: NP_001 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK ::::::::.: . :::::: ::::..:::::::::::.::.: :::::.::::.:::::: NP_001 SRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIK 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH :::::..::::::.::::.:::.. ::::::::::.:::::::: :::::.::::::::: NP_001 EDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGH 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFG-F----GDSRGGGGNFGPGPGSNFRGGSDGYG : ::.::::.:::: . :.: ::::. : : :. ::::::: : . . ::: : : NP_001 NCEVKKALSKQEMQSAGSQR-GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGG 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 SGR----GFGDG-YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG--YD .: : ::: :::.:: :::.::.:::.. ::::::::::::::::::::: :: NP_001 GGSRGSYGGGDGGYNGFGGD--GGNYGGGPGYSS-RGGYGGGGPGYGNQGGGYGGGGGYD 240 250 260 270 280 290 300 310 320 330 340 pF1KE3 ------NYGGGNYGSG-NYNDFGNYN-QQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG :.::::::.: ::::::::. :: :::::::.:.::: :. :.::::: :: : NP_001 GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG-RSSGSPYGGG-YGSG- 290 300 310 320 330 340 350 pF1KE3 SGGSGGYGGRSRY :::::::.: NP_001 -GGSGGYGSRRF 350 >>NP_001317178 (OMIM: 605372) heterogeneous nuclear ribo (378 aa) initn: 1420 init1: 1154 opt: 1450 Z-score: 672.7 bits: 133.1 E(89105): 1e-30 Smith-Waterman score: 1634; 71.1% identity (84.3% similar) in 356 aa overlap (15-350:29-376) 10 20 30 40 pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGK .: ::.:::::::::::::..:::...:.:: NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPG :::::::::: .::::::::::.: . :::::: ::::..:::::::::::.::.: ::: NP_001 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV ::.::::.:::::::::::..::::::.::::.:::.. ::::::::::.:::::::: : NP_001 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE3 DKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-F----GDSRGGGGNFGP ::::.:::::::::: ::.::::.:::: . :.: ::::. : : :. ::::::: NP_001 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQR-GRGGGSGNFMGRGGNFGGGGGNFGR 190 200 210 220 230 230 240 250 260 270 pF1KE3 GPGSNFRGGSDGYGSGR----GFGDG-YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGY : . . ::: : :.: : ::: :::.:: :::.::.:::.. ::::::::::: NP_001 GGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGD--GGNYGGGPGYSS-RGGYGGGGPGY 240 250 260 270 280 290 280 290 300 310 320 pF1KE3 GNQGGGYGGG--YD------NYGGGNYGSG-NYNDFGNYN-QQPSNYGPMKSGNFGGSRN :::::::::: :: :.::::::.: ::::::::. :: :::::::.:.::: :. NP_001 GNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG-RS 300 310 320 330 340 350 330 340 350 pF1KE3 MGGPYGGGNYGPGGSGGSGGYGGRSRY :.::::: :: : :::::::.: NP_001 SGSPYGGG-YGSG--GGSGGYGSRRF 360 370 >>NP_919223 (OMIM: 605372) heterogeneous nuclear ribonuc (378 aa) initn: 1420 init1: 1154 opt: 1450 Z-score: 672.7 bits: 133.1 E(89105): 1e-30 Smith-Waterman score: 1634; 71.1% identity (84.3% similar) in 356 aa overlap (15-350:29-376) 10 20 30 40 pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGK .: ::.:::::::::::::..:::...:.:: NP_919 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPG :::::::::: .::::::::::.: . :::::: ::::..:::::::::::.::.: ::: NP_919 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV ::.::::.:::::::::::..::::::.::::.:::.. ::::::::::.:::::::: : NP_919 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE3 DKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-F----GDSRGGGGNFGP ::::.:::::::::: ::.::::.:::: . :.: ::::. : : :. ::::::: NP_919 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQR-GRGGGSGNFMGRGGNFGGGGGNFGR 190 200 210 220 230 230 240 250 260 270 pF1KE3 GPGSNFRGGSDGYGSGR----GFGDG-YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGY : . . ::: : :.: : ::: :::.:: :::.::.:::.. ::::::::::: NP_919 GGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGD--GGNYGGGPGYSS-RGGYGGGGPGY 240 250 260 270 280 290 280 290 300 310 320 pF1KE3 GNQGGGYGGG--YD------NYGGGNYGSG-NYNDFGNYN-QQPSNYGPMKSGNFGGSRN :::::::::: :: :.::::::.: ::::::::. :: :::::::.:.::: :. NP_919 GNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG-RS 300 310 320 330 340 350 330 340 350 pF1KE3 MGGPYGGGNYGPGGSGGSGGYGGRSRY :.::::: :: : :::::::.: NP_919 SGSPYGGG-YGSG--GGSGGYGSRRF 360 370 >>NP_112420 (OMIM: 164017,615424,615426) heterogeneous n (372 aa) initn: 1694 init1: 1173 opt: 1439 Z-score: 667.9 bits: 132.2 E(89105): 1.9e-30 Smith-Waterman score: 1572; 66.5% identity (82.1% similar) in 358 aa overlap (15-351:8-361) 10 20 30 40 50 60 pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR .: ::.:::::::::::::.::::...:::: :::::::::: .:: NP_112 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK ::::::::.... :::::: ::::..:::::::::::.::.: .::::.::::.:::::: NP_112 SRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIK 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH :::::::::::::.::::..:::.::: :::::::.:::::::: :::::.:::::.::: NP_112 EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGH 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGG--GNFGPGPGSNFRG-----GSDG : :::::::.::: ..::. ::.:. .:: .:::: :: . : :.:: : :: : NP_112 NCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRG 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 YGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG--YDNY- :. : ::::::.:. : : ::.:::.:: :::.:: ::::::.::::. ::.: NP_112 GGGYGGSGDGYNGFGNDGGYG--GGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYN 240 250 260 270 280 290 300 310 320 330 pF1KE3 --GGGNYGSGN---------YNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPG :::..:.:. ::::::::.: ::.::::.::::: . ::::::. . NP_112 NGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSS--GPYGGGGQYFA 300 310 320 330 340 340 350 pF1KE3 GSGGSGGYGGRSRY ..::::: : NP_112 KPRNQGGYGGSSSSSSYGSGRRF 350 360 370 353 residues in 1 query sequences 63334102 residues in 89105 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Oct 20 17:10:53 2017 done: Fri Oct 20 17:10:54 2017 Total Scan time: 8.980 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]