FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1805, 320 aa
  1>>>pF1KE1805 320 - 320 aa - 320 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3911+/-0.000801; mu= 15.4115+/- 0.048
 mean_var=67.4709+/-13.115, 0's: 0 Z-trim(107.7): 13  B-trim: 0 in 0/51
 Lambda= 0.156141
 statistics sampled from 9714 (9716) to 9714 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.298), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS5344.1 AIMP2 gene_id:7965|Hs108|chr7           ( 320) 2131 488.8 2.4e-138


>>CCDS5344.1 AIMP2 gene_id:7965|Hs108|chr7                (320 aa)
 initn: 2131 init1: 2131 opt: 2131  Z-score: 2597.1  bits: 488.8 E(32554): 2.4e-138
Smith-Waterman score: 2131; 100.0% identity (100.0% similar) in 320 aa overlap (1-320:1-320)

               10        20        30        40        50        60
pF1KE1 MPMYQVKPYHGGGAPLRVELPTCMYRLPNVHGRSYGPAPGAGHVQEESNLSLQALESRQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MPMYQVKPYHGGGAPLRVELPTCMYRLPNVHGRSYGPAPGAGHVQEESNLSLQALESRQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DILKRLYELKAAVDGLSKMIQTPDADLDVTNIIQADEPTTLTTNALDLNSVLGKDYGALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DILKRLYELKAAVDGLSKMIQTPDADLDVTNIIQADEPTTLTTNALDLNSVLGKDYGALK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DIVINANPASPPLSLLVLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DIVINANPASPPLSLLVLHRLLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 YQLGFTLIWKNVPKTQMKFSIQTMCPIEGEGNIARFLFSLFGQKHNAVNATLIDSWVDIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YQLGFTLIWKNVPKTQMKFSIQTMCPIEGEGNIARFLFSLFGQKHNAVNATLIDSWVDIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 IFQLKEGSSKEKAAVFRSMNSALGKSPWLAGNELTVADVVLWSVLQQIGGCSVTVPANVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IFQLKEGSSKEKAAVFRSMNSALGKSPWLAGNELTVADVVLWSVLQQIGGCSVTVPANVQ
              250       260       270       280       290       300

              310       320
pF1KE1 RWMRSCENLAPFNTALKLLK
       ::::::::::::::::::::
CCDS53 RWMRSCENLAPFNTALKLLK
              310       320




320 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 16:26:58 2016 done: Sun Nov  6 16:26:58 2016
 Total Scan time:  2.660 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]