FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6531, 198 aa
  1>>>pF1KE6531 198 - 198 aa - 198 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8438+/-0.000856; mu= 11.8517+/- 0.052
 mean_var=77.2769+/-15.051, 0's: 0 Z-trim(107.6): 11  B-trim: 0 in 0/50
 Lambda= 0.145898
 statistics sampled from 9656 (9663) to 9656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.297), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS5310.1 TCTE3 gene_id:6991|Hs108|chr6           ( 198) 1301 282.7   1e-76


>>CCDS5310.1 TCTE3 gene_id:6991|Hs108|chr6                (198 aa)
 initn: 1301 init1: 1301 opt: 1301  Z-score: 1490.8  bits: 282.7 E(32554): 1e-76
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KE6 MEKRGRGVKSSPIQTPNQTPQQAPVTPRKERRPSMFEKEAYTQILRERLRESIHNVQYVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MEKRGRGVKSSPIQTPNQTPQQAPVTPRKERRPSMFEKEAYTQILRERLRESIHNVQYVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PPFDDSIADIGKEWKSALAKLKFANSYRMEPLKKFQAHSVETKVQQILTESLKDVKYDDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PPFDDSIADIGKEWKSALAKLKFANSYRMEPLKKFQAHSVETKVQQILTESLKDVKYDDK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VFSHLSLELADRILLAVKEFGYHRYKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VFSHLSLELADRILLAVKEFGYHRYKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAK
              130       140       150       160       170       180

              190        
pF1KE6 HEAESYVALVLVFALYYE
       ::::::::::::::::::
CCDS53 HEAESYVALVLVFALYYE
              190        




198 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:09:04 2016 done: Tue Nov  8 14:09:05 2016
 Total Scan time:  2.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]