FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6630, 257 aa 1>>>pF1KE6630 257 - 257 aa - 257 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4434+/-0.00083; mu= 14.0385+/- 0.050 mean_var=64.1425+/-12.573, 0's: 0 Z-trim(106.9): 13 B-trim: 0 in 0/50 Lambda= 0.160141 statistics sampled from 9247 (9254) to 9247 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.284), width: 16 Scan time: 1.890 The best scores are: opt bits E(32554) CCDS43524.1 PACRG gene_id:135138|Hs108|chr6 ( 257) 1727 407.4 4.8e-114 CCDS5284.1 PACRG gene_id:135138|Hs108|chr6 ( 296) 1379 327.1 8.7e-90 >>CCDS43524.1 PACRG gene_id:135138|Hs108|chr6 (257 aa) initn: 1727 init1: 1727 opt: 1727 Z-score: 2160.9 bits: 407.4 E(32554): 4.8e-114 Smith-Waterman score: 1727; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257) 10 20 30 40 50 60 pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MVGKALVPYYRQILPVLNIFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENA 190 200 210 220 230 240 250 pF1KE6 FINIKYVVPTYESCLLN ::::::::::::::::: CCDS43 FINIKYVVPTYESCLLN 250 >>CCDS5284.1 PACRG gene_id:135138|Hs108|chr6 (296 aa) initn: 1713 init1: 1379 opt: 1379 Z-score: 1725.4 bits: 327.1 E(32554): 8.7e-90 Smith-Waterman score: 1590; 86.5% identity (86.5% similar) in 289 aa overlap (1-250:1-289) 10 20 30 40 50 60 pF1KE6 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 MVAEKETLSLNKCPDKMPKRTKLLAQQPLPVHQPHSLVSEGFTVKAMMKNSVVRGPPAAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 AFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 FPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQHLVVSAE 130 140 150 160 170 180 190 200 pF1KE6 MVGKALVPYYRQILPVLNIFKNMN------------------------------------ :::::::::::::::::::::::: CCDS52 MVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVA 190 200 210 220 230 240 210 220 230 240 250 pF1KE6 ---VNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN :::::::::::::::::::::::::::::::::::::::::::::: CCDS52 EIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLLN 250 260 270 280 290 257 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:55:58 2016 done: Tue Nov 8 14:55:59 2016 Total Scan time: 1.890 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]