FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6615, 289 aa
  1>>>pF1KE6615 289 - 289 aa - 289 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9587+/-0.000845; mu= 12.5413+/- 0.051
 mean_var=78.7571+/-15.511, 0's: 0 Z-trim(107.9): 4  B-trim: 64 in 1/50
 Lambda= 0.144521
 statistics sampled from 9843 (9846) to 9843 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.302), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS5227.1 IYD gene_id:389434|Hs108|chr6           ( 289) 1917 408.9 2.1e-114
CCDS55066.1 IYD gene_id:389434|Hs108|chr6          ( 247) 1537 329.7 1.3e-90
CCDS55067.1 IYD gene_id:389434|Hs108|chr6          ( 293) 1537 329.7 1.5e-90


>>CCDS5227.1 IYD gene_id:389434|Hs108|chr6                (289 aa)
 initn: 1917 init1: 1917 opt: 1917  Z-score: 2167.3  bits: 408.9 E(32554): 2.1e-114
Smith-Waterman score: 1917; 99.7% identity (99.7% similar) in 289 aa overlap (1-289:1-289)

               10        20        30        40        50        60
pF1KE6 MYFLTPILVAILCILVVWIFKNADRSMEKKKGEPRTRAEARPWVDEDLKDSSDLHQAEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MYFLTPILVAILCILVVWIFKNADRSMEKKKGEPRTRAEARPWVDEDLKDSSDLHQAEED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ADEWQESEENVEHIPFSHNHYPEKEMVKRSQEFYELLNKRRSVRFISNEQVPMEVIDNVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 ADEWQESEENVEHIPFSHNHYPEKEMVKRSQEFYELLNKRRSVRFISNEQVPMEVIDNVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 RTAGTAPSGAHTEPWTFVVVKDPDVKHKIRKIIEEEEEINYMKRMGHRWVTDLKKLRTNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 RTAGTAPSGAHTEPWTFVVVKDPDVKHKIRKIIEEEEEINYMKRMGHRWVTDLKKLRTNW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 IKEYLDTAPILILIFKQVHGFAANGKKKVHYYNEISVSIACGILLAALQNAGLVTVTTTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 IKEYLDTAPILILIFKQVHGFAANGKKKVHYYNEISVSIACGILLAALQNAGLVTVTTTP
              190       200       210       220       230       240

              250       260       270       280         
pF1KE6 LNCGPRLRVLLGRPAHEKLPMLLPVGYPSKEATVPDLKRKPLDQIMVTV
       ::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS52 LNCGPRLRVLLGRPAHEKLLMLLPVGYPSKEATVPDLKRKPLDQIMVTV
              250       260       270       280         

>>CCDS55066.1 IYD gene_id:389434|Hs108|chr6               (247 aa)
 initn: 1533 init1: 1533 opt: 1537  Z-score: 1740.1  bits: 329.7 E(32554): 1.3e-90
Smith-Waterman score: 1537; 95.9% identity (96.7% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KE6 MYFLTPILVAILCILVVWIFKNADRSMEKKKGEPRTRAEARPWVDEDLKDSSDLHQAEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MYFLTPILVAILCILVVWIFKNADRSMEKKKGEPRTRAEARPWVDEDLKDSSDLHQAEED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ADEWQESEENVEHIPFSHNHYPEKEMVKRSQEFYELLNKRRSVRFISNEQVPMEVIDNVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ADEWQESEENVEHIPFSHNHYPEKEMVKRSQEFYELLNKRRSVRFISNEQVPMEVIDNVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 RTAGTAPSGAHTEPWTFVVVKDPDVKHKIRKIIEEEEEINYMKRMGHRWVTDLKKLRTNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RTAGTAPSGAHTEPWTFVVVKDPDVKHKIRKIIEEEEEINYMKRMGHRWVTDLKKLRTNW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 IKEYLDTAPILILIFKQVHGFAANGKKKVHYYNEISVSIACGILLAALQNAGLVTVTTTP
       :::::::::::::::::::::::::::::::::::::::::::::::::  : . .    
CCDS55 IKEYLDTAPILILIFKQVHGFAANGKKKVHYYNEISVSIACGILLAALQVFGKIILKELA
              190       200       210       220       230       240

              250       260       270       280         
pF1KE6 LNCGPRLRVLLGRPAHEKLPMLLPVGYPSKEATVPDLKRKPLDQIMVTV
       :                                                
CCDS55 LISFLNL                                          
                                                        

>>CCDS55067.1 IYD gene_id:389434|Hs108|chr6               (293 aa)
 initn: 1533 init1: 1533 opt: 1537  Z-score: 1739.0  bits: 329.7 E(32554): 1.5e-90
Smith-Waterman score: 1537; 98.7% identity (99.1% similar) in 234 aa overlap (1-233:1-234)

               10        20        30        40        50        60
pF1KE6 MYFLTPILVAILCILVVWIFKNADRSMEKKKGEPRTRAEARPWVDEDLKDSSDLHQAEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MYFLTPILVAILCILVVWIFKNADRSMEKKKGEPRTRAEARPWVDEDLKDSSDLHQAEED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ADEWQESEENVEHIPFSHNHYPEKEMVKRSQEFYELLNKRRSVRFISNEQVPMEVIDNVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ADEWQESEENVEHIPFSHNHYPEKEMVKRSQEFYELLNKRRSVRFISNEQVPMEVIDNVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 RTAGTAPSGAHTEPWTFVVVKDPDVKHKIRKIIEEEEEINYMKRMGHRWVTDLKKLRTNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RTAGTAPSGAHTEPWTFVVVKDPDVKHKIRKIIEEEEEINYMKRMGHRWVTDLKKLRTNW
              130       140       150       160       170       180

              190       200       210       220        230         
pF1KE6 IKEYLDTAPILILIFKQVHGFAANGKKKVHYYNEISVSIACGILLAALQ-NAGLVTVTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::: : :.      
CCDS55 IKEYLDTAPILILIFKQVHGFAANGKKKVHYYNEISVSIACGILLAALQVNNGITMRHQT
              190       200       210       220       230       240

     240       250       260       270       280            
pF1KE6 PLNCGPRLRVLLGRPAHEKLPMLLPVGYPSKEATVPDLKRKPLDQIMVTV   
                                                            
CCDS55 ARHRHLIEGPGRSSEACSKLSSQGCPECRSGDCHYHSSQLWPSTEGAPGPPRT
              250       260       270       280       290   




289 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:47:47 2016 done: Tue Nov  8 14:47:48 2016
 Total Scan time:  1.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]