Result of FASTA (ccds) for
pFN21AE1741
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1741, 244 aa
1>>>pF1KE1741 244 - 244 aa - 244 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2574+/-0.000613; mu= 15.0460+/- 0.037
mean_var=64.0877+/-12.844, 0's: 0 Z-trim(111.1): 36 B-trim: 0 in 0/54
Lambda= 0.160209
statistics sampled from 12069 (12105) to 12069 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.372), width: 16
Scan time: 2.130
The best scores are: opt bits E(32554)
CCDS5225.1 ULBP3 gene_id:79465|Hs108|chr6 ( 244) 1700 400.9 4.1e-112
CCDS5223.1 ULBP1 gene_id:80329|Hs108|chr6 ( 244) 900 216.0 1.9e-56
CCDS43514.1 RAET1G gene_id:353091|Hs108|chr6 ( 334) 848 204.0 1e-52
CCDS5224.1 RAET1L gene_id:154064|Hs108|chr6 ( 246) 823 198.2 4.3e-51
CCDS5222.1 ULBP2 gene_id:80328|Hs108|chr6 ( 246) 816 196.6 1.3e-50
CCDS5221.1 RAET1E gene_id:135250|Hs108|chr6 ( 263) 528 130.0 1.5e-30
CCDS59042.1 RAET1E gene_id:135250|Hs108|chr6 ( 209) 511 126.0 1.9e-29
CCDS59043.1 RAET1E gene_id:135250|Hs108|chr6 ( 212) 511 126.0 1.9e-29
CCDS59044.1 RAET1E gene_id:135250|Hs108|chr6 ( 227) 416 104.1 8.3e-23
CCDS1342.1 MR1 gene_id:3140|Hs108|chr1 ( 341) 282 73.2 2.5e-13
CCDS53440.1 MR1 gene_id:3140|Hs108|chr1 ( 249) 267 69.7 2.1e-12
CCDS53441.1 MR1 gene_id:3140|Hs108|chr1 ( 214) 263 68.7 3.5e-12
CCDS34373.1 A gene_id:3105|Hs108|chr6 ( 365) 251 66.1 3.7e-11
>>CCDS5225.1 ULBP3 gene_id:79465|Hs108|chr6 (244 aa)
initn: 1700 init1: 1700 opt: 1700 Z-score: 2126.4 bits: 400.9 E(32554): 4.1e-112
Smith-Waterman score: 1700; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFI
190 200 210 220 230 240
pF1KE1 LPGI
::::
CCDS52 LPGI
>>CCDS5223.1 ULBP1 gene_id:80329|Hs108|chr6 (244 aa)
initn: 921 init1: 828 opt: 900 Z-score: 1127.0 bits: 216.0 E(32554): 1.9e-56
Smith-Waterman score: 900; 54.9% identity (76.6% similar) in 244 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::::::.: : .: .:: :: .: .:.: : :.: : : ::::::. ::..
CCDS52 MAAAASPAFLLCLPLL-HLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDER
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
:: ::: . :. ... : ... .: .: .: : ::.: . :. .: : ..:.. : ::
CCDS52 PFLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: :: :. :::::: :.:.:::::::::::::..: ::..: :::::. .:
CCDS52 TLQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVT
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLII-LCF
::. .:. ::: ::..:::. .. :.:: ::..::: .::::.::::::::.::: :::
CCDS52 MFFQKISLGDCKMWLEEFLMYWEQMLDPTKPPSLAPGTTQPKAMATTLSPWSLLIIFLCF
180 190 200 210 220 230
240
pF1KE1 ILPGI
:: :
CCDS52 ILAGR
240
>>CCDS43514.1 RAET1G gene_id:353091|Hs108|chr6 (334 aa)
initn: 708 init1: 708 opt: 848 Z-score: 1060.0 bits: 204.0 E(32554): 1e-52
Smith-Waterman score: 848; 54.7% identity (74.5% similar) in 243 aa overlap (1-241:1-241)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::::::.: :: .: :: .: :: :: ::: :..:.: : : .:: ::.:::.:
CCDS43 MAAAASPAFLLRLPLL-LLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
.:: ::::: : .. : ..: .: :: : .:::: . : .: : .::.. :. ::
CCDS43 TFLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: .:.:. ::::.::::. ::::::.:: ::.:: :::.::::::.:. .:
CCDS43 TLQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMT
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTA--PPTMAPGLAQPKAIATTLSPWSFLIILC
:...:: :: .::.:::: . :::.: ::::. : :::.: :::: :.:.:
CCDS43 MSFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLI-LCCLLIMC
180 190 200 210 220 230
240
pF1KE1 FILPGI
...
CCDS43 LLICSRHSLTQSHGHHPQSLQPPPHPPLLHPTWLLRRVLWSDSYQIAKRPLSGGHVTRVT
240 250 260 270 280 290
>>CCDS5224.1 RAET1L gene_id:154064|Hs108|chr6 (246 aa)
initn: 753 init1: 707 opt: 823 Z-score: 1030.8 bits: 198.2 E(32554): 4.3e-51
Smith-Waterman score: 823; 53.8% identity (74.1% similar) in 247 aa overlap (1-244:1-246)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
::::: ::.: : .: .::: :: . : : ::: :..:.: : : .:: ::.:::.:
CCDS52 MAAAAIPALLLCLPLL-FLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
.:: ::::. : .. : ..: .: :: : .:::: . : .: : .::..::. ::
CCDS52 TFLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: .:.:. ::::::.::. ::::::..: ::.:: :::.::::::.:. ..
CCDS52 TLQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVA
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTA--PPTMAPGLAQPKAIATTLSPWSFLIIL-
:...:: :: .::.:::: . :::.: : .:. : .: .: :::: .::::
CCDS52 MSFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILP
180 190 200 210 220 230
240
pF1KE1 CFILPGI
:::::::
CCDS52 CFILPGI
240
>>CCDS5222.1 ULBP2 gene_id:80328|Hs108|chr6 (246 aa)
initn: 754 init1: 708 opt: 816 Z-score: 1022.1 bits: 196.6 E(32554): 1.3e-50
Smith-Waterman score: 816; 54.3% identity (73.3% similar) in 247 aa overlap (1-244:1-246)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
:::::. :: : .: :: :: .:::: ::: :..:.: : : .:: ::.:::.:
CCDS52 MAAAAATKILLCLPLL-LLLSGWSRAGRADPHSLCYDITVIPKFRPGPRWCAVQGQVDEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
.:: ::::. : .. : ..: .: :: : .:::: . : .: : .::..::. ::
CCDS52 TFLHYDCGNKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLRDIQLENYTPKEPL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
:::.::::: .:.:. :::::::::. ::::::..: ::.:: :::.::::::.:. ..
CCDS52 TLQARMSCEQKAEGHSSGSWQFSFDGQIFLLFDSEKRMWTTVHPGARKMKEKWENDKVVA
120 130 140 150 160 170
190 200 210 220 230
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTA--PPTMAPGLAQPKAIATTLSPWSFLIIL-
:.. :: :: .::.:::: . :::.: : .:. : .: .: :::: .::::
CCDS52 MSFHYFSMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILP
180 190 200 210 220 230
240
pF1KE1 CFILPGI
:::::::
CCDS52 CFILPGI
240
>>CCDS5221.1 RAET1E gene_id:135250|Hs108|chr6 (263 aa)
initn: 524 init1: 318 opt: 528 Z-score: 661.9 bits: 130.0 E(32554): 1.5e-30
Smith-Waterman score: 528; 41.0% identity (64.8% similar) in 210 aa overlap (32-241:31-235)
10 20 30 40 50 60
pF1KE1 AAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKN
::: .:::: : : :: :::.: ....
CCDS52 MRRISLTSSPVRLLLFLLLLLIALEIMVGGHSLCFNFTIKSLSRPGQPWCEAQVFLNKNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPLT
::.:. .. : .: : ...:::..::. . : :::. ::. : : . .. : : :
CCDS52 FLQYNSDNNMVKPLGLLGKKVYATSTWGELTQTLGEVGRDLRMLLCDIK-PQIKTSDPST
70 80 90 100 110
130 140 150 160 170 180
pF1KE1 LQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTT
:::.: :. ::. .::::. .:.: ::::. : :::.. : ..:: :.:: ::
CCDS52 LQVEMFCQREAERCTGASWQFATNGEKSLLFDAMNMTWTVINHEASKIKETWKKDRGLEK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 FFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFIL
.:. .: :: :::.:: : . :::. :. : . ... : ..:. :::
CCDS52 YFRKLSKGDCDHWLREFLGHWEAMPEPTVSPVNASDIHW----SSSSLPDRWIILGAFIL
180 190 200 210 220 230
pF1KE1 PGI
CCDS52 LVLMGIVLICVWWQNGEWQAGLWPLRTS
240 250 260
>>CCDS59042.1 RAET1E gene_id:135250|Hs108|chr6 (209 aa)
initn: 512 init1: 306 opt: 511 Z-score: 642.1 bits: 126.0 E(32554): 1.9e-29
Smith-Waterman score: 511; 44.4% identity (67.4% similar) in 178 aa overlap (32-209:31-207)
10 20 30 40 50 60
pF1KE1 AAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKN
::: .:::: : : :: :::.: ....
CCDS59 MRRISLTSSPVRLLLFLLLLLIALEIMVGGHSLCFNFTIKSLSRPGQPWCEAQVFLNKNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPLT
::.:. .. : .: : ...:::..::. . : :::. ::. : : . .. : : :
CCDS59 FLQYNSDNNMVKPLGLLGKKVYATSTWGELTQTLGEVGRDLRMLLCDIK-PQIKTSDPST
70 80 90 100 110
130 140 150 160 170 180
pF1KE1 LQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTT
:::.: :. ::. .::::. .:.: ::::. : :::.. : ..:: :.:: ::
CCDS59 LQVEMFCQREAERCTGASWQFATNGEKSLLFDAMNMTWTVINHEASKIKETWKKDRGLEK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 FFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFIL
.:. .: :: :::.:: : . :::
CCDS59 YFRKLSKGDCDHWLREFLGHWEAMPEPTGN
180 190 200
>>CCDS59043.1 RAET1E gene_id:135250|Hs108|chr6 (212 aa)
initn: 512 init1: 306 opt: 511 Z-score: 642.1 bits: 126.0 E(32554): 1.9e-29
Smith-Waterman score: 511; 44.4% identity (67.4% similar) in 178 aa overlap (32-209:31-207)
10 20 30 40 50 60
pF1KE1 AAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKN
::: .:::: : : :: :::.: ....
CCDS59 MRRISLTSSPVRLLLFLLLLLIALEIMVGGHSLCFNFTIKSLSRPGQPWCEAQVFLNKNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 FLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPLT
::.:. .. : .: : ...:::..::. . : :::. ::. : : . .. : : :
CCDS59 FLQYNSDNNMVKPLGLLGKKVYATSTWGELTQTLGEVGRDLRMLLCDIK-PQIKTSDPST
70 80 90 100 110
130 140 150 160 170 180
pF1KE1 LQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTT
:::.: :. ::. .::::. .:.: ::::. : :::.. : ..:: :.:: ::
CCDS59 LQVEMFCQREAERCTGASWQFATNGEKSLLFDAMNMTWTVINHEASKIKETWKKDRGLEK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 FFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFIL
.:. .: :: :::.:: : . :::
CCDS59 YFRKLSKGDCDHWLREFLGHWEAMPEPTGRRST
180 190 200 210
>>CCDS59044.1 RAET1E gene_id:135250|Hs108|chr6 (227 aa)
initn: 388 init1: 318 opt: 416 Z-score: 522.9 bits: 104.1 E(32554): 8.3e-23
Smith-Waterman score: 416; 39.5% identity (63.8% similar) in 177 aa overlap (65-241:28-199)
40 50 60 70 80 90
pF1KE1 WYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEM
:. .. : .: : ...:::..::. .
CCDS59 MRRISLTSSPVRLLLFLLLLLIALEIMYNSDNNMVKPLGLLGKKVYATSTWGELTQT
10 20 30 40 50
100 110 120 130 140 150
pF1KE1 LREVGQRLRLELADTELEDFTPSGPLTLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDS
: :::. ::. : : . .. : : ::::.: :. ::. .::::. .:.: ::::.
CCDS59 LGEVGRDLRMLLCDIK-PQIKTSDPSTLQVEMFCQREAERCTGASWQFATNGEKSLLFDA
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE1 NNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTM
: :::.. : ..:: :.:: :: .:. .: :: :::.:: : . :::. :.
CCDS59 MNMTWTVINHEASKIKETWKKDRGLEKYFRKLSKGDCDHWLREFLGHWEAMPEPTVSPVN
120 130 140 150 160 170
220 230 240
pF1KE1 APGLAQPKAIATTLSPWSFLIILCFILPGI
: . ...: : ..:. :::
CCDS59 ASDIHWS---SSSL-PDRWIILGAFILLVLMGIVLICVWWQNGEWQAGLWPLRTS
180 190 200 210 220
>>CCDS1342.1 MR1 gene_id:3140|Hs108|chr1 (341 aa)
initn: 283 init1: 216 opt: 282 Z-score: 352.9 bits: 73.2 E(32554): 2.5e-13
Smith-Waterman score: 282; 26.8% identity (52.5% similar) in 198 aa overlap (15-212:8-204)
10 20 30 40 50 60
pF1KE1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
.:: .. . . .::: : . : :: . ::..
CCDS13 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSH
10 20 30 40 50
70 80 90 100 110 120
pF1KE1 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
. .:: . . . . : : : . ..:: : ...:: . . .. ::
CCDS13 PITTYDSVTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQ-RHYNHSGSH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE1 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
: : ..:: :: : :...::. ::.:.... .: .: :. .:. :: ..
CCDS13 TYQRMIGCELLEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHEL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE1 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTAPPTMAPGLAQPKAIATTLSPWSFLIILCFI
. : ..: .::. :: . : :. : ::
CCDS13 LYQKNWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEI
180 190 200 210 220 230
pF1KE1 LPGI
CCDS13 YMTWMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVHMVLQVP
240 250 260 270 280 290
244 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:29:16 2016 done: Sun Nov 6 16:29:16 2016
Total Scan time: 2.130 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]