FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1777, 285 aa 1>>>pF1KE1777 285 - 285 aa - 285 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4340+/-0.000335; mu= 15.4449+/- 0.021 mean_var=78.8625+/-16.006, 0's: 0 Z-trim(115.5): 16 B-trim: 22 in 1/50 Lambda= 0.144424 statistics sampled from 25995 (26008) to 25995 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.305), width: 16 Scan time: 6.710 The best scores are: opt bits E(85289) NP_001238982 (OMIM: 176851) protein-L-isoaspartate ( 285) 1898 404.7 1e-112 NP_005380 (OMIM: 176851) protein-L-isoaspartate(D- ( 285) 1898 404.7 1e-112 NP_001238978 (OMIM: 176851) protein-L-isoaspartate ( 286) 1877 400.3 2.1e-111 XP_011534170 (OMIM: 176851) PREDICTED: protein-L-i ( 223) 1379 296.5 3e-80 NP_001238980 (OMIM: 176851) protein-L-isoaspartate ( 250) 1161 251.1 1.6e-66 NP_001238979 (OMIM: 176851) protein-L-isoaspartate ( 250) 872 190.9 2.1e-48 NP_001238981 (OMIM: 176851) protein-L-isoaspartate ( 251) 851 186.5 4.4e-47 >>NP_001238982 (OMIM: 176851) protein-L-isoaspartate(D-a (285 aa) initn: 1898 init1: 1898 opt: 1898 Z-score: 2144.6 bits: 404.7 E(85289): 1e-112 Smith-Waterman score: 1898; 99.6% identity (100.0% similar) in 285 aa overlap (1-285:1-285) 10 20 30 40 50 60 pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: NP_001 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 190 200 210 220 230 240 250 260 270 280 pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK ::::::::::::::::::::::::::::::::::::::::::::: NP_001 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK 250 260 270 280 >>NP_005380 (OMIM: 176851) protein-L-isoaspartate(D-aspa (285 aa) initn: 1898 init1: 1898 opt: 1898 Z-score: 2144.6 bits: 404.7 E(85289): 1e-112 Smith-Waterman score: 1898; 99.6% identity (100.0% similar) in 285 aa overlap (1-285:1-285) 10 20 30 40 50 60 pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: NP_005 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 190 200 210 220 230 240 250 260 270 280 pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK ::::::::::::::::::::::::::::::::::::::::::::: NP_005 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK 250 260 270 280 >>NP_001238978 (OMIM: 176851) protein-L-isoaspartate(D-a (286 aa) initn: 1877 init1: 1877 opt: 1877 Z-score: 2120.9 bits: 400.3 E(85289): 2.1e-111 Smith-Waterman score: 1877; 99.6% identity (100.0% similar) in 283 aa overlap (1-283:1-283) 10 20 30 40 50 60 pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: NP_001 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 190 200 210 220 230 240 250 260 270 280 pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK ::::::::::::::::::::::::::::::::::::::::::: NP_001 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRDEL 250 260 270 280 >>XP_011534170 (OMIM: 176851) PREDICTED: protein-L-isoas (223 aa) initn: 1379 init1: 1379 opt: 1379 Z-score: 1561.6 bits: 296.5 E(85289): 3e-80 Smith-Waterman score: 1379; 99.0% identity (100.0% similar) in 207 aa overlap (77-283:14-220) 50 60 70 80 90 100 pF1KE1 KVVLYLLRVCLAMAWKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMD .::::::::::::::::::::::::::::: XP_011 MITSTPIPKSSQSENGIIKTDKVFEVMLATDRSHYAKCNPYMD 10 20 30 40 110 120 130 140 150 160 pF1KE1 SPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIG 50 60 70 80 90 100 170 180 190 200 210 220 pF1KE1 IDHIKELVDDSINNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQA :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQA 110 120 130 140 150 160 230 240 250 260 270 280 pF1KE1 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRDEL 170 180 190 200 210 220 >>NP_001238980 (OMIM: 176851) protein-L-isoaspartate(D-a (250 aa) initn: 1640 init1: 1161 opt: 1161 Z-score: 1315.4 bits: 251.1 E(85289): 1.6e-66 Smith-Waterman score: 1574; 87.0% identity (87.7% similar) in 285 aa overlap (1-285:1-250) 10 20 30 40 50 60 pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP ::::::::::::::::. :::::::: NP_001 WKSGGASHSELIHNLRS-----------------------------------FQATISAP 70 80 130 140 150 160 170 180 pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: NP_001 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 150 160 170 180 190 200 250 260 270 280 pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK ::::::::::::::::::::::::::::::::::::::::::::: NP_001 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK 210 220 230 240 250 >>NP_001238979 (OMIM: 176851) protein-L-isoaspartate(D-a (250 aa) initn: 872 init1: 872 opt: 872 Z-score: 990.0 bits: 190.9 E(85289): 2.1e-48 Smith-Waterman score: 1589; 87.4% identity (87.7% similar) in 285 aa overlap (1-285:1-250) 10 20 30 40 50 60 pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN :: ::::::::::::::::::::.:: NP_001 HM-----------------------------------VGCTGKVIGIDHIKELVDDSVNN 130 140 190 200 210 220 230 240 pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 150 160 170 180 190 200 250 260 270 280 pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK ::::::::::::::::::::::::::::::::::::::::::::: NP_001 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK 210 220 230 240 250 >>NP_001238981 (OMIM: 176851) protein-L-isoaspartate(D-a (251 aa) initn: 851 init1: 851 opt: 851 Z-score: 966.3 bits: 186.5 E(85289): 4.4e-47 Smith-Waterman score: 1568; 87.3% identity (87.6% similar) in 283 aa overlap (1-283:1-248) 10 20 30 40 50 60 pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN :: ::::::::::::::::::::.:: NP_001 HM-----------------------------------VGCTGKVIGIDHIKELVDDSVNN 130 140 190 200 210 220 230 240 pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 150 160 170 180 190 200 250 260 270 280 pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK ::::::::::::::::::::::::::::::::::::::::::: NP_001 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRDEL 210 220 230 240 250 285 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:29:14 2016 done: Sun Nov 6 05:29:15 2016 Total Scan time: 6.710 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]