FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1777, 285 aa 1>>>pF1KE1777 285 - 285 aa - 285 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5310+/-0.000788; mu= 14.9742+/- 0.047 mean_var=78.7393+/-16.112, 0's: 0 Z-trim(108.8): 13 B-trim: 0 in 0/52 Lambda= 0.144537 statistics sampled from 10438 (10447) to 10438 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.321), width: 16 Scan time: 2.160 The best scores are: opt bits E(32554) CCDS5219.2 PCMT1 gene_id:5110|Hs108|chr6 ( 285) 1898 404.9 3.4e-113 CCDS59041.1 PCMT1 gene_id:5110|Hs108|chr6 ( 286) 1877 400.5 7.1e-112 CCDS75534.1 PCMT1 gene_id:5110|Hs108|chr6 ( 250) 1161 251.2 5.6e-67 CCDS75533.1 PCMT1 gene_id:5110|Hs108|chr6 ( 250) 872 190.9 7.7e-49 >>CCDS5219.2 PCMT1 gene_id:5110|Hs108|chr6 (285 aa) initn: 1898 init1: 1898 opt: 1898 Z-score: 2145.7 bits: 404.9 E(32554): 3.4e-113 Smith-Waterman score: 1898; 99.6% identity (100.0% similar) in 285 aa overlap (1-285:1-285) 10 20 30 40 50 60 pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: CCDS52 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 190 200 210 220 230 240 250 260 270 280 pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK ::::::::::::::::::::::::::::::::::::::::::::: CCDS52 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK 250 260 270 280 >>CCDS59041.1 PCMT1 gene_id:5110|Hs108|chr6 (286 aa) initn: 1877 init1: 1877 opt: 1877 Z-score: 2122.0 bits: 400.5 E(32554): 7.1e-112 Smith-Waterman score: 1877; 99.6% identity (100.0% similar) in 283 aa overlap (1-283:1-283) 10 20 30 40 50 60 pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: CCDS59 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 190 200 210 220 230 240 250 260 270 280 pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK ::::::::::::::::::::::::::::::::::::::::::: CCDS59 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRDEL 250 260 270 280 >>CCDS75534.1 PCMT1 gene_id:5110|Hs108|chr6 (250 aa) initn: 1640 init1: 1161 opt: 1161 Z-score: 1316.0 bits: 251.2 E(32554): 5.6e-67 Smith-Waterman score: 1574; 87.0% identity (87.7% similar) in 285 aa overlap (1-285:1-250) 10 20 30 40 50 60 pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP ::::::::::::::::. :::::::: CCDS75 WKSGGASHSELIHNLRS-----------------------------------FQATISAP 70 80 130 140 150 160 170 180 pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: CCDS75 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNN 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 150 160 170 180 190 200 250 260 270 280 pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK ::::::::::::::::::::::::::::::::::::::::::::: CCDS75 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK 210 220 230 240 250 >>CCDS75533.1 PCMT1 gene_id:5110|Hs108|chr6 (250 aa) initn: 872 init1: 872 opt: 872 Z-score: 990.3 bits: 190.9 E(32554): 7.7e-49 Smith-Waterman score: 1589; 87.4% identity (87.7% similar) in 285 aa overlap (1-285:1-250) 10 20 30 40 50 60 pF1KE1 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MPGARSGGSGGDGSNSGSYSGDASGAVTVWEVVSLLGKLLGTVVALKVVLYLLRVCLAMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 WKSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINN :: ::::::::::::::::::::.:: CCDS75 HM-----------------------------------VGCTGKVIGIDHIKELVDDSVNN 130 140 190 200 210 220 230 240 pF1KE1 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 VRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 150 160 170 180 190 200 250 260 270 280 pF1KE1 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK ::::::::::::::::::::::::::::::::::::::::::::: CCDS75 VGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRWK 210 220 230 240 250 285 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:29:13 2016 done: Sun Nov 6 05:29:14 2016 Total Scan time: 2.160 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]