FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3104, 275 aa 1>>>pF1KE3104 275 - 275 aa - 275 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0247+/-0.00102; mu= 7.6967+/- 0.061 mean_var=133.7066+/-28.148, 0's: 0 Z-trim(109.0): 40 B-trim: 0 in 0/51 Lambda= 0.110917 statistics sampled from 10581 (10616) to 10581 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.326), width: 16 Scan time: 2.110 The best scores are: opt bits E(32554) CCDS5129.1 RNF217 gene_id:154214|Hs108|chr6 ( 275) 1967 325.9 2e-89 CCDS69191.1 RNF217 gene_id:154214|Hs108|chr6 ( 542) 1625 271.4 1e-72 >>CCDS5129.1 RNF217 gene_id:154214|Hs108|chr6 (275 aa) initn: 1967 init1: 1967 opt: 1967 Z-score: 1719.1 bits: 325.9 E(32554): 2e-89 Smith-Waterman score: 1967; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275) 10 20 30 40 50 60 pF1KE3 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS51 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPCPQCKHF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS51 TTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 IEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQLRFFGDHTSNLSIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS51 IEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQLRFFGDHTSNLSIF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GCKYRYLPERPHLRRLVRGSVCAGKLFIAPLIMVLGLALGAIAVVIVEEIKTYWNLISGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS51 GCKYRYLPERPHLRRLVRGSVCAGKLFIAPLIMVLGLALGAIAVVIVEEIKTYWNLISGR 190 200 210 220 230 240 250 260 270 pF1KE3 TRNQTQHLAPQPVLLSDMLYCLKQVFICISYLLPL ::::::::::::::::::::::::::::::::::: CCDS51 TRNQTQHLAPQPVLLSDMLYCLKQVFICISYLLPL 250 260 270 >>CCDS69191.1 RNF217 gene_id:154214|Hs108|chr6 (542 aa) initn: 1625 init1: 1625 opt: 1625 Z-score: 1419.2 bits: 271.4 E(32554): 1e-72 Smith-Waterman score: 1625; 99.6% identity (100.0% similar) in 225 aa overlap (2-226:294-518) 10 20 30 pF1KE3 MKVQLGQVEIKCPITECFEFLEETTVVYNLT .::::::::::::::::::::::::::::: CCDS69 RVCLEDKPIKPLPCCKKAVCEECLKVYLSAQVQLGQVEIKCPITECFEFLEETTVVYNLT 270 280 290 300 310 320 40 50 60 70 80 90 pF1KE3 HEDSIKYKYFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 HEDSIKYKYFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWC 330 340 350 360 370 380 100 110 120 130 140 150 pF1KE3 FKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 FKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQ 390 400 410 420 430 440 160 170 180 190 200 210 pF1KE3 CNTNFCYRCGERYRQLRFFGDHTSNLSIFGCKYRYLPERPHLRRLVRGSVCAGKLFIAPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 CNTNFCYRCGERYRQLRFFGDHTSNLSIFGCKYRYLPERPHLRRLVRGSVCAGKLFIAPL 450 460 470 480 490 500 220 230 240 250 260 270 pF1KE3 IMVLGLALGAIAVVIVEEIKTYWNLISGRTRNQTQHLAPQPVLLSDMLYCLKQVFICISY ::::::::::::::: CCDS69 IMVLGLALGAIAVVIGLFVFPIYCLCKKQRKRSRTGMHW 510 520 530 540 275 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:52:25 2016 done: Sat Nov 5 22:52:25 2016 Total Scan time: 2.110 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]