FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1850, 369 aa 1>>>pF1KE1850 369 - 369 aa - 369 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9455+/-0.000391; mu= 18.7867+/- 0.024 mean_var=68.0008+/-14.005, 0's: 0 Z-trim(113.1): 40 B-trim: 450 in 1/52 Lambda= 0.155531 statistics sampled from 22291 (22330) to 22291 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.262), width: 16 Scan time: 7.090 The best scores are: opt bits E(85289) NP_059117 (OMIM: 605196) ubiquinone biosynthesis O ( 369) 2470 563.3 3.2e-160 XP_006715563 (OMIM: 605196) PREDICTED: ubiquinone ( 410) 1956 448.0 1.8e-125 XP_016866422 (OMIM: 605196) PREDICTED: ubiquinone ( 250) 1644 377.8 1.5e-104 XP_011534201 (OMIM: 605196) PREDICTED: ubiquinone ( 250) 1644 377.8 1.5e-104 XP_005267075 (OMIM: 605196) PREDICTED: ubiquinone ( 288) 1144 265.7 9.7e-71 XP_011534200 (OMIM: 605196) PREDICTED: ubiquinone ( 329) 810 190.8 3.9e-48 >>NP_059117 (OMIM: 605196) ubiquinone biosynthesis O-met (369 aa) initn: 2470 init1: 2470 opt: 2470 Z-score: 2997.5 bits: 563.3 E(85289): 3.2e-160 Smith-Waterman score: 2470; 99.5% identity (100.0% similar) in 369 aa overlap (1-369:1-369) 10 20 30 40 50 60 pF1KE1 MWSGRKLGSSGGWFLRVLGPGGCNTKAARPLISSAVYVKNQLSGTLQIKPGVFNEYRTIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_059 MWSGRKLGSSGGWFLRVLGPGGCNTKAARPLISSAVYVKNQLSGTLQIKPGVFNEYRTIW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FKSYRTIFSCLNRIKSFRYPWARLYSTSQTTVDSGEVKTFLALAHKWWDEQGVYAPLHSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_059 FKSYRTIFSCLNRIKSFRYPWARLYSTSQTTVDSGEVKTFLALAHKWWDEQGVYAPLHSM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 NDLRVPFIRDNLLKTIPNHQPGKPLLGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_059 NDLRVPFIRDNLLKTIPNHQPGKPLLGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDEN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 IKTAQCHKSFDPVLDKRIEYRVCSLEEIVEETAETFDAVVASEVVEHVIDLETFLQCCCQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_059 IKTAQCHKSFDPVLDKRIEYRVCSLEEIVEETAETFDAVVASEVVEHVIDLETFLQCCCQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 VLKPGGSLFITTINKTQLSYALGIVFSEQIAGIVPKGTHTWEKFVSPETLESILESNGLS :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: NP_059 VLKPGGSLFITTINKTQLSYALGIVFSEQIASIVPKGTHTWEKFVSPETLESILESNGLS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 VQTVVGMLYNPFSGYWHWSENTSLNYAAHAVKSRVQEHPASAEFVLKGETEELQANACTN ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: NP_059 VQTVVGMLYNPFSGYWHWSENTSLNYAAYAVKSRVQEHPASAEFVLKGETEELQANACTN 310 320 330 340 350 360 pF1KE1 PAVHEKLKK ::::::::: NP_059 PAVHEKLKK >>XP_006715563 (OMIM: 605196) PREDICTED: ubiquinone bios (410 aa) initn: 1944 init1: 1944 opt: 1956 Z-score: 2373.6 bits: 448.0 E(85289): 1.8e-125 Smith-Waterman score: 2312; 89.3% identity (89.8% similar) in 401 aa overlap (10-369:10-410) 10 20 30 40 50 60 pF1KE1 MWSGRKLGSSGGWFLRVLGPGGCNTKAARPLISSAVYVKNQLSGTLQIKPGVFNEYRTIW ::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MWSGRKLGSSGGWFLRVLGPGGCNTKAARPLISSAVYVKNQLSGTLQIKPGVFNEYRTIW 10 20 30 40 50 60 70 pF1KE1 FKSYRTIFSCLNRIKSFR-----------------------------------------Y :::::::::::::::::: : XP_006 FKSYRTIFSCLNRIKSFRWSFTSVAQAGVQWCDLGSLQPPPPGFKRFSCLSLPSHWDYRY 70 80 90 100 110 120 80 90 100 110 120 130 pF1KE1 PWARLYSTSQTTVDSGEVKTFLALAHKWWDEQGVYAPLHSMNDLRVPFIRDNLLKTIPNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PWARLYSTSQTTVDSGEVKTFLALAHKWWDEQGVYAPLHSMNDLRVPFIRDNLLKTIPNH 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE1 QPGKPLLGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQCHKSFDPVLDKRIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 QPGKPLLGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQCHKSFDPVLDKRIE 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE1 YRVCSLEEIVEETAETFDAVVASEVVEHVIDLETFLQCCCQVLKPGGSLFITTINKTQLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 YRVCSLEEIVEETAETFDAVVASEVVEHVIDLETFLQCCCQVLKPGGSLFITTINKTQLS 250 260 270 280 290 300 260 270 280 290 300 310 pF1KE1 YALGIVFSEQIAGIVPKGTHTWEKFVSPETLESILESNGLSVQTVVGMLYNPFSGYWHWS ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: XP_006 YALGIVFSEQIASIVPKGTHTWEKFVSPETLESILESNGLSVQTVVGMLYNPFSGYWHWS 310 320 330 340 350 360 320 330 340 350 360 pF1KE1 ENTSLNYAAHAVKSRVQEHPASAEFVLKGETEELQANACTNPAVHEKLKK :::::::::.:::::::::::::::::::::::::::::::::::::::: XP_006 ENTSLNYAAYAVKSRVQEHPASAEFVLKGETEELQANACTNPAVHEKLKK 370 380 390 400 410 >>XP_016866422 (OMIM: 605196) PREDICTED: ubiquinone bios (250 aa) initn: 1644 init1: 1644 opt: 1644 Z-score: 1998.2 bits: 377.8 E(85289): 1.5e-104 Smith-Waterman score: 1644; 99.2% identity (100.0% similar) in 250 aa overlap (120-369:1-250) 90 100 110 120 130 140 pF1KE1 TTVDSGEVKTFLALAHKWWDEQGVYAPLHSMNDLRVPFIRDNLLKTIPNHQPGKPLLGMK :::::::::::::::::::::::::::::: XP_016 MNDLRVPFIRDNLLKTIPNHQPGKPLLGMK 10 20 30 150 160 170 180 190 200 pF1KE1 ILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQCHKSFDPVLDKRIEYRVCSLEEIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQCHKSFDPVLDKRIEYRVCSLEEIV 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE1 EETAETFDAVVASEVVEHVIDLETFLQCCCQVLKPGGSLFITTINKTQLSYALGIVFSEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EETAETFDAVVASEVVEHVIDLETFLQCCCQVLKPGGSLFITTINKTQLSYALGIVFSEQ 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE1 IAGIVPKGTHTWEKFVSPETLESILESNGLSVQTVVGMLYNPFSGYWHWSENTSLNYAAH ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::. XP_016 IASIVPKGTHTWEKFVSPETLESILESNGLSVQTVVGMLYNPFSGYWHWSENTSLNYAAY 160 170 180 190 200 210 330 340 350 360 pF1KE1 AVKSRVQEHPASAEFVLKGETEELQANACTNPAVHEKLKK :::::::::::::::::::::::::::::::::::::::: XP_016 AVKSRVQEHPASAEFVLKGETEELQANACTNPAVHEKLKK 220 230 240 250 >>XP_011534201 (OMIM: 605196) PREDICTED: ubiquinone bios (250 aa) initn: 1644 init1: 1644 opt: 1644 Z-score: 1998.2 bits: 377.8 E(85289): 1.5e-104 Smith-Waterman score: 1644; 99.2% identity (100.0% similar) in 250 aa overlap (120-369:1-250) 90 100 110 120 130 140 pF1KE1 TTVDSGEVKTFLALAHKWWDEQGVYAPLHSMNDLRVPFIRDNLLKTIPNHQPGKPLLGMK :::::::::::::::::::::::::::::: XP_011 MNDLRVPFIRDNLLKTIPNHQPGKPLLGMK 10 20 30 150 160 170 180 190 200 pF1KE1 ILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQCHKSFDPVLDKRIEYRVCSLEEIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQCHKSFDPVLDKRIEYRVCSLEEIV 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE1 EETAETFDAVVASEVVEHVIDLETFLQCCCQVLKPGGSLFITTINKTQLSYALGIVFSEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EETAETFDAVVASEVVEHVIDLETFLQCCCQVLKPGGSLFITTINKTQLSYALGIVFSEQ 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE1 IAGIVPKGTHTWEKFVSPETLESILESNGLSVQTVVGMLYNPFSGYWHWSENTSLNYAAH ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::. XP_011 IASIVPKGTHTWEKFVSPETLESILESNGLSVQTVVGMLYNPFSGYWHWSENTSLNYAAY 160 170 180 190 200 210 330 340 350 360 pF1KE1 AVKSRVQEHPASAEFVLKGETEELQANACTNPAVHEKLKK :::::::::::::::::::::::::::::::::::::::: XP_011 AVKSRVQEHPASAEFVLKGETEELQANACTNPAVHEKLKK 220 230 240 250 >>XP_005267075 (OMIM: 605196) PREDICTED: ubiquinone bios (288 aa) initn: 1142 init1: 1142 opt: 1144 Z-score: 1391.0 bits: 265.7 E(85289): 9.7e-71 Smith-Waterman score: 1761; 77.5% identity (78.0% similar) in 369 aa overlap (1-369:1-288) 10 20 30 40 50 60 pF1KE1 MWSGRKLGSSGGWFLRVLGPGGCNTKAARPLISSAVYVKNQLSGTLQIKPGVFNEYRTIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MWSGRKLGSSGGWFLRVLGPGGCNTKAARPLISSAVYVKNQLSGTLQIKPGVFNEYRTIW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 FKSYRTIFSCLNRIKSFRYPWARLYSTSQTTVDSGEVKTFLALAHKWWDEQGVYAPLHSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 FKSYRTIFSCLNRIKSFRYPWARLYSTSQTTVDSGEVKTFLALAHKWWDEQGVYAPLHSM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 NDLRVPFIRDNLLKTIPNHQPGKPLLGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDEN ::::::::::::::::::::::::::::::::::::::::::: XP_005 NDLRVPFIRDNLLKTIPNHQPGKPLLGMKILDVGCGGGLLTEP----------------- 130 140 150 160 190 200 210 220 230 240 pF1KE1 IKTAQCHKSFDPVLDKRIEYRVCSLEEIVEETAETFDAVVASEVVEHVIDLETFLQCCCQ XP_005 ------------------------------------------------------------ 250 260 270 280 290 300 pF1KE1 VLKPGGSLFITTINKTQLSYALGIVFSEQIAGIVPKGTHTWEKFVSPETLESILESNGLS :::::::::::::::::::::::::::.:::::::::::::::::::::::::::: XP_005 ----GGSLFITTINKTQLSYALGIVFSEQIASIVPKGTHTWEKFVSPETLESILESNGLS 170 180 190 200 210 310 320 330 340 350 360 pF1KE1 VQTVVGMLYNPFSGYWHWSENTSLNYAAHAVKSRVQEHPASAEFVLKGETEELQANACTN ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: XP_005 VQTVVGMLYNPFSGYWHWSENTSLNYAAYAVKSRVQEHPASAEFVLKGETEELQANACTN 220 230 240 250 260 270 pF1KE1 PAVHEKLKK ::::::::: XP_005 PAVHEKLKK 280 >>XP_011534200 (OMIM: 605196) PREDICTED: ubiquinone bios (329 aa) initn: 1335 init1: 810 opt: 810 Z-score: 985.2 bits: 190.8 E(85289): 3.9e-48 Smith-Waterman score: 1669; 69.8% identity (70.2% similar) in 410 aa overlap (1-369:1-329) 10 20 30 40 50 60 pF1KE1 MWSGRKLGSSGGWFLRVLGPGGCNTKAARPLISSAVYVKNQLSGTLQIKPGVFNEYRTIW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MWSGRKLGSSGGWFLRVLGPGGCNTKAARPLISSAVYVKNQLSGTLQIKPGVFNEYRTIW 10 20 30 40 50 60 70 pF1KE1 FKSYRTIFSCLNRIKSFR-----------------------------------------Y :::::::::::::::::: : XP_011 FKSYRTIFSCLNRIKSFRWSFTSVAQAGVQWCDLGSLQPPPPGFKRFSCLSLPSHWDYRY 70 80 90 100 110 120 80 90 100 110 120 130 pF1KE1 PWARLYSTSQTTVDSGEVKTFLALAHKWWDEQGVYAPLHSMNDLRVPFIRDNLLKTIPNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PWARLYSTSQTTVDSGEVKTFLALAHKWWDEQGVYAPLHSMNDLRVPFIRDNLLKTIPNH 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE1 QPGKPLLGMKILDVGCGGGLLTEPLGRLGASVIGIDPVDENIKTAQCHKSFDPVLDKRIE :::::::::::::::::::::::: XP_011 QPGKPLLGMKILDVGCGGGLLTEP------------------------------------ 190 200 200 210 220 230 240 250 pF1KE1 YRVCSLEEIVEETAETFDAVVASEVVEHVIDLETFLQCCCQVLKPGGSLFITTINKTQLS ::::::::::::::: XP_011 ---------------------------------------------GGSLFITTINKTQLS 210 260 270 280 290 300 310 pF1KE1 YALGIVFSEQIAGIVPKGTHTWEKFVSPETLESILESNGLSVQTVVGMLYNPFSGYWHWS ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YALGIVFSEQIASIVPKGTHTWEKFVSPETLESILESNGLSVQTVVGMLYNPFSGYWHWS 220 230 240 250 260 270 320 330 340 350 360 pF1KE1 ENTSLNYAAHAVKSRVQEHPASAEFVLKGETEELQANACTNPAVHEKLKK :::::::::.:::::::::::::::::::::::::::::::::::::::: XP_011 ENTSLNYAAYAVKSRVQEHPASAEFVLKGETEELQANACTNPAVHEKLKK 280 290 300 310 320 369 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 16:42:31 2016 done: Sun Nov 6 16:42:32 2016 Total Scan time: 7.090 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]