FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6521, 175 aa 1>>>pF1KE6521 175 - 175 aa - 175 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3286+/-0.00033; mu= 13.4654+/- 0.021 mean_var=75.8202+/-14.794, 0's: 0 Z-trim(115.6): 19 B-trim: 0 in 0/55 Lambda= 0.147293 statistics sampled from 26105 (26106) to 26105 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.306), width: 16 Scan time: 3.210 The best scores are: opt bits E(85289) NP_054884 (OMIM: 252010,611776) NADH dehydrogenase ( 175) 1132 249.3 2.4e-66 >>NP_054884 (OMIM: 252010,611776) NADH dehydrogenase [ub (175 aa) initn: 1132 init1: 1132 opt: 1132 Z-score: 1312.2 bits: 249.3 E(85289): 2.4e-66 Smith-Waterman score: 1132; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175) 10 20 30 40 50 60 pF1KE6 MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LLSFLKDVYVDSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 LLSFLKDVYVDSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEAL 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 TLLNNHKLFPETWTAEKIMQEYQLEQKDVNSLLKYFVTFEVEIFPPEDKKAIRSK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_054 TLLNNHKLFPETWTAEKIMQEYQLEQKDVNSLLKYFVTFEVEIFPPEDKKAIRSK 130 140 150 160 170 175 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:03:53 2016 done: Tue Nov 8 14:03:53 2016 Total Scan time: 3.210 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]