FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6521, 175 aa 1>>>pF1KE6521 175 - 175 aa - 175 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6186+/-0.000762; mu= 11.3969+/- 0.046 mean_var=71.8079+/-13.996, 0's: 0 Z-trim(108.3): 16 B-trim: 0 in 0/53 Lambda= 0.151352 statistics sampled from 10122 (10126) to 10122 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.311), width: 16 Scan time: 1.060 The best scores are: opt bits E(32554) CCDS5037.1 NDUFAF4 gene_id:29078|Hs108|chr6 ( 175) 1132 255.8 1e-68 >>CCDS5037.1 NDUFAF4 gene_id:29078|Hs108|chr6 (175 aa) initn: 1132 init1: 1132 opt: 1132 Z-score: 1347.3 bits: 255.8 E(32554): 1e-68 Smith-Waterman score: 1132; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175) 10 20 30 40 50 60 pF1KE6 MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LLSFLKDVYVDSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 LLSFLKDVYVDSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEAL 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 TLLNNHKLFPETWTAEKIMQEYQLEQKDVNSLLKYFVTFEVEIFPPEDKKAIRSK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 TLLNNHKLFPETWTAEKIMQEYQLEQKDVNSLLKYFVTFEVEIFPPEDKKAIRSK 130 140 150 160 170 175 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:03:52 2016 done: Tue Nov 8 14:03:53 2016 Total Scan time: 1.060 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]